| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,342,678 – 11,342,770 |
| Length | 92 |
| Max. P | 0.947635 |
| Location | 11,342,678 – 11,342,770 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.53 |
| Mean single sequence MFE | -39.93 |
| Consensus MFE | -28.73 |
| Energy contribution | -28.12 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11342678 92 - 20766785 UGUGGACCGAUGAGAUGACAUCCAGUCAGCAGAAUGCCGCAGCUGCUGCAGCGGCGGCAGCGGCAGCGGCUCAUCAGG---CGGGCAGUGGUCCA ..((((((((((((.((((.....)))).).....(((((.((((((((.......)))))))).))))))))))..(---(.....)))))))) ( -45.00) >DroVir_CAF1 3338 92 - 1 UUUGGACAGACGAAAUGACAUCCAGUCAACAAAAUGCUGCGGCUGCUGCAGCC---GCAGUGGCAGCGGCUCACCAAAUUUCUGCCAAUGGUACU .((((.((((.....((((.....)))).......(((((.((..((((....---))))..)).)))))..........))))))))....... ( -34.00) >DroGri_CAF1 928 92 - 1 UGUGGACGGAUGAGAUGACGUCGAGUCAACAAAAUGCGGCGGCGGCAGCGGCA---GCUGUGGCAGCUGCACAUCAAAUGUCGGGCAGUGGUGCU ....((((..((((.((((.....)))).)....((((((.((.(((((....---))))).)).))))))..)))..)))).((((....)))) ( -36.30) >DroSec_CAF1 787 92 - 1 UGUGGACCGAUGAGAUGACCUCCAGUCAGCAGAAUGCCGCAGCUGCUGCAGCUGCGGCGGCGGCAGCGGCUCAUCAGG---CGGGCAGCGGUCCA ..((((((((((((.((((.....))))((....(((((((((((...)))))))))))...)).....))))))..(---(.....)))))))) ( -47.70) >DroSim_CAF1 787 92 - 1 UGUGGACCGAUGAGAUGACUUCAAGUCAGCAGAAUGCCGCAGCUGCUGCAGCUGCGGCAGCGGCAGCGGCUCACCAGG---CGGGCAGCGGUCCA ..((((((.......((((.....))))((....(((((((((((...)))))))))))...)).((.((((......---.)))).)))))))) ( -45.70) >DroMoj_CAF1 3147 92 - 1 UCUGGACAGACGAGAUGACUUCCAGUCAGCAGAAUGCAGCAGCGGCUGCGGCA---GCAGUGGCAGCGGCUCACCAAAUUUCUGGCAGCGGCACU ((((....(((..((.....))..)))..)))).(((.(((((.(((((.((.---...)).))))).)))..(((......)))..)).))).. ( -30.90) >consensus UGUGGACCGAUGAGAUGACAUCCAGUCAGCAGAAUGCCGCAGCUGCUGCAGCA___GCAGCGGCAGCGGCUCACCAAA___CGGGCAGCGGUCCA ......(((......((((.....)))).......(((((.((((((((.......)))))))).)))))...........)))........... (-28.73 = -28.12 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:05 2006