Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,341,128 – 11,341,245 |
Length | 117 |
Max. P | 0.891498 |
Location | 11,341,128 – 11,341,245 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -40.23 |
Consensus MFE | -39.91 |
Energy contribution | -40.23 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.19 |
Structure conservation index | 0.99 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11341128 117 + 20766785 UUGCAGUUGGCAACCAUUGUCGCCUCCUUCUGGGGGCGAUCCCUCCGAUGCCUCCUCCGCGGGCGAUCGAUAGUUAUGGUCGUGUCAGACAUCCUGUAAUUUCGCCAUUCCCCCUCC .(((((..((((......(((((((((....)))))))))........))))..))..)))(((((...((((.....(((......)))...))))....)))))........... ( -38.34) >DroSec_CAF1 128956 116 + 1 -UGCAGUUGGCAACCAUUGUCGCCUCCUUCUGGGGGCGAUCCCUCCGUUGCCUCCUCCGCGGGCGAUCGAUAGUUAUGGUCGUGUCAGACAUCCUGUAAUUUCGCCAUUCCCCCUCC -.((((..((((((....(((((((((....)))))))))......))))))..))..)).(((((...((((.....(((......)))...))))....)))))........... ( -42.30) >DroSim_CAF1 134701 117 + 1 UUGCAGUUGGCAACCAUUGUCGCCUCCUUCUGGGGGCGAUCCCUCCGUUGCCUCCUCCGCGGGCGAUCGAUAGUUAUGGUCGUGUCAGACAUCCUGUAAUUUCGCCAUUCCCCCUCC .(((((..((((((....(((((((((....)))))))))......))))))..))..)))(((((...((((.....(((......)))...))))....)))))........... ( -42.50) >DroYak_CAF1 132011 117 + 1 UUGCAGUUGGCAACCAUUGUCGCCUCCUUCUGGGGGCGAUCCCUCCGAUGUCUCCUCCGCGGGCGAUCGAUAGUUAUGGUCGUGUCAGACAUCCUGUAAUUUCGCCAUUCCCCCUCC .......((((.......(((((((((....)))))))))......(((((((((.....))(((((((.......)))))))...)))))))..........)))).......... ( -37.80) >consensus UUGCAGUUGGCAACCAUUGUCGCCUCCUUCUGGGGGCGAUCCCUCCGAUGCCUCCUCCGCGGGCGAUCGAUAGUUAUGGUCGUGUCAGACAUCCUGUAAUUUCGCCAUUCCCCCUCC .(((((..((((((....(((((((((....)))))))))......))))))..))..)))(((((...((((.....(((......)))...))))....)))))........... (-39.91 = -40.23 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:04 2006