Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,339,908 – 11,340,016 |
Length | 108 |
Max. P | 0.627639 |
Location | 11,339,908 – 11,340,016 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.44 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -27.60 |
Energy contribution | -28.23 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.07 |
Mean z-score | -1.57 |
Structure conservation index | 0.75 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11339908 108 + 20766785 --------UGCUCCGGCUGCUACUGCUACCAGCUCCUCCAGAUACGACUCCUUCAGCUCCGGCCCCACGAAUGCCGGCUAACAAGAGGAGCAACCAAGCGCUGGGCUAUGCUAGCA --------.(((..((..((....))..)).(((((((.......((.....))....(((((.........))))).......))))))).....)))(((((......))))). ( -34.20) >DroSec_CAF1 127633 107 + 1 --------UGCUCCGGCUGCUACUGCUACCAGCUCCUCCAGAUACGACUCGUUCAGCUCCGGC-CCACGAAUGCCGGCUAACAAGAGGAGCAACCAAGCGCUGGGCUAUGCUAGCA --------.(((..((..((....))..)).(((((((..((......))(((.(((..((((-........))))))))))..))))))).....)))(((((......))))). ( -36.70) >DroSim_CAF1 133371 107 + 1 --------UGCUCCGGCUGCUACUGCUACCAGCUCCUCCAGAUACGACUCCUUCAGCUCCGGC-CCACGAAUGCCGGCUAACAAGAGGAGCAACCAAGCGCUGGGCUAUGCUAGCA --------.(((..((..((....))..)).(((((((.......((.....))....(((((-........))))).......))))))).....)))(((((......))))). ( -35.00) >DroYak_CAF1 130727 107 + 1 CUCUGCUCUGCUCCGGCUGC-----CUAGCAGCUCCUCCAGAUCCGACUCCUUCAGCUCCGGC-CCACGAAUGCCGGCCAGCAAGAGGAGCAACCAAGCA---GGCUGGCUCAGCA ..((((((((....((((((-----...))))))....))))...(.((((((..((((((((-........)))))..)))..)))))))......)))---)((((...)))). ( -41.60) >consensus ________UGCUCCGGCUGCUACUGCUACCAGCUCCUCCAGAUACGACUCCUUCAGCUCCGGC_CCACGAAUGCCGGCUAACAAGAGGAGCAACCAAGCGCUGGGCUAUGCUAGCA .........(((..(((.(((..((((....(((((((.......((.....))....(((((.........))))).......))))))).....))))...)))...)))))). (-27.60 = -28.23 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:00 2006