Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,338,802 – 11,338,916 |
Length | 114 |
Max. P | 0.917087 |
Location | 11,338,802 – 11,338,916 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -37.44 |
Consensus MFE | -29.00 |
Energy contribution | -29.40 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -2.34 |
Structure conservation index | 0.77 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11338802 114 - 20766785 CGGGGGUUACUCUGAC---UCCUCGCAAUAUCUGUUUGCUCUUCGGCCGCGGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC ((((((((.....)))---.))))).....((.((((((.(....)..))))))..))(((((((((((((..(((((..(......)..))))).)))))))))))))........ ( -38.50) >DroSec_CAF1 126548 114 - 1 CGGGGGUUACUCUGAC---UCCUCGCAAUCUCUGUGUGCUCUUCGGUCGGGGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC .((..(((.(((((((---(.(.((((.....)))).)......))))))))......(((((((((((((..(((((..(......)..))))).))))))))))))))))..)). ( -38.60) >DroSim_CAF1 132282 114 - 1 CGGGGGUUACUCUGAC---UCCUCGCAAUCUCUGUUUGCUCUUCGGCCGGGCAUCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC .(((((((.....)))---)))).(.((((((....(((((.......)))))...))(((((((((((((..(((((..(......)..))))).))))))))))))))))).).. ( -37.50) >DroEre_CAF1 130452 116 - 1 CGGGGGUUACUCUGACUGCUCCUCGCAAUCUCUGUCUGCUCUUCGGCCG-GGACCUGAAAUCUCGAAAUGCUCUUGGCCCGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC (((((((.((...((.(((.....))).))...))..)).)))))...(-(((.....(((((((((((((..(((((..(......)..))))).)))))))))))))....)))) ( -35.70) >DroYak_CAF1 129607 112 - 1 CGG-GGUUACUUUGAC---UCCUCGCAAUCUCUGUCUUCUCUUGGGCCG-GGACCUGAAAUCUCGAAAUGCUCUUGGCCCGGCUUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC .((-((((.....)))---)))(((...((((.((((......)))).)-)))..)))(((((((((((((..(((((..(......)..))))).)))))))))))))........ ( -36.90) >consensus CGGGGGUUACUCUGAC___UCCUCGCAAUCUCUGUCUGCUCUUCGGCCG_GGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC (((((....)))))..........(.((((((.((((.(.(....)..).))))..))(((((((((((((..(((((..(......)..))))).))))))))))))))))).).. (-29.00 = -29.40 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006