Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,336,966 – 11,337,096 |
Length | 130 |
Max. P | 0.999624 |
Location | 11,336,966 – 11,337,056 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -23.54 |
Energy contribution | -24.34 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -2.62 |
Structure conservation index | 0.79 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11336966 90 - 20766785 CAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAACGGCAAUU---------CGUGUUGACAAGUGCAAACAUUAA .(((.((((((((((((....))))))))..........((((..((((((.......))))))..---------......)))).))))...)))... ( -33.50) >DroSec_CAF1 124719 71 - 1 CAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAACGGC----------------------------AAACAUUAA ...((((((((((((((....)))))))).........))))))(((((((.......))))----------------------------)))...... ( -31.20) >DroSim_CAF1 130433 90 - 1 CAUGGGCACGUGCCAGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAACGGCAAUU---------CGUGUUGACAAGUGCAAACAUUAA .(((.((((.((...(((((...(((((((.......))))))).((((((.......))))))..---------.)))))..)).))))...)))... ( -31.60) >DroEre_CAF1 128556 89 - 1 CAUGGGCACGUGCCCGGCUCUCUGGGUACAUCAUCCUUUCGUCCUUUGCCACUCAUAACGGUAAUU---------CGUGUUGACAAGUGCA-ACGGUAA .....((((((((((((....)))))))).(((......((....(((((.........)))))..---------))...)))...)))).-....... ( -23.90) >DroYak_CAF1 127709 98 - 1 CAUGGGCACGUGCCCGGCUCUCUGGGCACAUCAUCCUUUCGUCCUUUGCCGCUCAUAACGGUAAUUCGUGUAAUUCGUGUUGACAAGUGCA-ACAGUAA .....((((((((((((....))))))))................((((((.......))))))...))))......(((((.(....)))-))).... ( -28.70) >consensus CAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAACGGCAAUU_________CGUGUUGACAAGUGCAAACAUUAA ..((.((((((((((((....))))))))................((((((.......))))))......................))))...)).... (-23.54 = -24.34 + 0.80)
Location | 11,336,997 – 11,337,096 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -25.66 |
Energy contribution | -25.70 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.21 |
Mean z-score | -2.41 |
Structure conservation index | 0.91 |
SVM decision value | 3.80 |
SVM RNA-class probability | 0.999624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11336997 99 - 20766785 UAAAUUGUCAAAUUGUUUGGCCCCCUUAUCACGAUGUCCUCAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAAC .............((..((((........((((((((((....))))).((((((((....)))))))).......)))))......))))..)).... ( -32.14) >DroSec_CAF1 124731 99 - 1 UAAAUUGUCAAAUUGUUUGGCCCCCUUAUCGCGAUGUCCUCAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAAC .............((..((((........((((((((((....))))).((((((((....)))))))).......)))))......))))..)).... ( -31.74) >DroSim_CAF1 130464 99 - 1 UAAAUUGUCAAAUUGUUUGGCCCCCUUAUCGCGAUGUCCUCAUGGGCACGUGCCAGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAAC .............((..((((..(((...((((.(((((....)))))))))..)))......(((((((.......)))))))...))))..)).... ( -29.90) >DroEre_CAF1 128586 99 - 1 UAAAUUGUCAAAUUGUUUGUCCCUCUUAUCGCGAUGUCCUCAUGGGCACGUGCCCGGCUCUCUGGGUACAUCAUCCUUUCGUCCUUUGCCACUCAUAAC ..............................(((((((((....))))).((((((((....)))))))).........))))................. ( -21.70) >DroYak_CAF1 127748 99 - 1 UAAACUGUCAAAUUGUUUGCCCCCCUUAUCGCGAUGUCCUCAUGGGCACGUGCCCGGCUCUCUGGGCACAUCAUCCUUUCGUCCUUUGCCGCUCAUAAC (((((.........)))))...........(((.(((((....))))).((((((((....))))))))....................)))....... ( -25.50) >consensus UAAAUUGUCAAAUUGUUUGGCCCCCUUAUCGCGAUGUCCUCAUGGGCACGUGCCCGGCACUCCGGGCACAUCAUCCUUGUGUCCUUUGCCGCUCAUAAC .............((..((((........((((((((((....))))).((((((((....)))))))).......)))))......))))..)).... (-25.66 = -25.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:51 2006