Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,166,961 – 2,167,055 |
Length | 94 |
Max. P | 0.633680 |
Location | 2,166,961 – 2,167,055 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.77 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -16.36 |
Energy contribution | -16.95 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.10 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2166961 94 + 20766785 CUUUUUCUCUUCCUUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACA-- ......................((..((((((.(((((((((.......)))))))))))).((...(((.....)))...))...)))..)).-- ( -20.40) >DroSec_CAF1 1775 95 + 1 UUCUUUC-CUUCCCUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACGGAUUGGCUUAAGUAGCAGUUCACAGUUUUGCACC .......-..........(((((.(((.((((.(((((((((.......)))))))))))))((...(((.....)))...)).)))..))))).. ( -24.00) >DroSim_CAF1 1775 95 + 1 UUAUUUC-CUUCCCUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACACC .......-..............((..((((((.(((((((((.......)))))))))))).((...(((.....)))...))...)))..))... ( -20.40) >DroEre_CAF1 1791 96 + 1 UAUUUUCUUUCCUUUUAUGGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUUACACUUUUACUAA ..................(.(((((((.....((((((((((.......)))))))))).))))))).)...(((((.(((....))).))))).. ( -22.70) >DroYak_CAF1 1788 94 + 1 UUUAUUU--UUUUUGUAUUCCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUUAAAGUUUUACACC .......--....((((...(((((((.....((((((((((.......)))))))))).)))))))(((.....)))............)))).. ( -21.10) >DroPer_CAF1 19072 93 + 1 CAACUUAUCUCCC---CUCUCAGUUCGAUGUGGAUAACUUCCACAGCAAGGAAAUCAUCAGUGAUUGGCUGAAAUAGGAGCACAUAGGUUUACUCU .(((((((((((.---...((((((.(.((((((.....)))))).).....(((((....)))))))))))....))))...)))))))...... ( -24.50) >consensus UUUUUUC_CUUCCUUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACACC ....................(((((((.....((((((((((.......)))))))))).)))))))(((.....))).................. (-16.36 = -16.95 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:47 2006