Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,333,199 – 11,333,308 |
Length | 109 |
Max. P | 0.926278 |
Location | 11,333,199 – 11,333,308 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.01 |
Mean single sequence MFE | -25.89 |
Consensus MFE | -7.46 |
Energy contribution | -7.90 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.11 |
Structure conservation index | 0.29 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11333199 109 + 20766785 GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCAUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUGUUGU-UGCUUAAG-----UACACGGUACUUU-----GUGUGCCAAAA ((((...........))))((...............)).......(((((.((((.(.((((....)))).).))))-.))))).(-----(((((((....))-----))))))..... ( -25.66) >DroSec_CAF1 120573 114 + 1 GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU-UGCUUAAGGGUAGUACCCGUUAUUUU-----GUGUGCCAAAA ..............((.((((..((((((....(((((((.....(((((.((((.(.((((....)))).).))))-.))))).))))))).....)))))).-----..))))))... ( -29.90) >DroSim_CAF1 124689 109 + 1 GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU-UGCUUAAGGGUAGUAC-----ACUUU-----GUGUGCCAAAA ..............((.((((....((((((..(((((((.....(((((.((((.(.((((....)))).).))))-.))))).)))))))..-----.))))-----))))))))... ( -28.80) >DroEre_CAF1 121809 82 + 1 GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGAAAUAGGCCGCAAAAGACAC--AAUUGUCUU------------------------------------GAGUGGCAAAU ((((...........))))((...............(((((....)))))(((..((((((.--...))))))------------------------------------..))))).... ( -19.40) >DroYak_CAF1 123394 113 + 1 GGUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAGCCCGCAAAAGACAUUAAAUUGUGUGCUCUUUUGUUAAGGAUAGUA-------GUACGUGGGCAUUGCCAAAU (((......((((.(((....)))..))))......)))(((.(((.((((((.....(((......)))(((((((.((......)).)).)-------))))))))))))).)))... ( -25.70) >consensus GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU_UGCUUAAGG_UAGUAC_____ACUUU_____GUGUGCCAAAA ..............((.((((.............((((..((.......))))))...((((......)))).......................................))))))... ( -7.46 = -7.90 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:49 2006