Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,332,666 – 11,332,764 |
Length | 98 |
Max. P | 0.719979 |
Location | 11,332,666 – 11,332,764 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -18.96 |
Energy contribution | -19.63 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11332666 98 - 20766785 UUCUUUUAUUUUUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAAAGAGUUUUUGCGGUUUGCCAAGAAAGUUACCAGUUUUAGAU .(((...(((...(((((((((...((((((((...(((...((((.......))))..)))...)))))))).))))))))).....)))...))). ( -19.70) >DroSec_CAF1 120032 93 - 1 UUCUUU-----UUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAUAGGGUUUUUGCGAUUUGGUAAGAAAGUUGCCAGUUUUUGAU ......-----............(((((((((((((((..((((((.(((((.....)))))....))))))..))))).....)).))))))))... ( -25.00) >DroSim_CAF1 124152 89 - 1 UUCUUU-----U----UUUUGGGAGGAACUGCAUUUGCUGAAAUGUUGCCCUUACAUAGGGUUUUUGCGAUUUGGUAAGAGAGUUGCCAGUUUUUGAU .((((.-----.----....))))((((((.(.(((((..((.(((.(((((.....)))))....))).))..))))).))))).)).......... ( -22.10) >consensus UUCUUU_____UUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAUAGGGUUUUUGCGAUUUGGUAAGAAAGUUGCCAGUUUUUGAU ........................((((((...(((((((((((((.(((((.....)))))....)))))))))))))..)))).)).......... (-18.96 = -19.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:47 2006