Locus 3325

Sequence ID 2R_DroMel_CAF1
Location 11,324,897 – 11,324,988
Length 91
Max. P 0.953714
window5438

overview

Window 8

Location 11,324,897 – 11,324,988
Length 91
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -22.52
Consensus MFE -19.36
Energy contribution -19.69
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.48
Structure conservation index 0.86
SVM decision value 1.44
SVM RNA-class probability 0.953714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11324897 91 + 20766785
UUAAACUCCCGGCAUAAAGCACUGACGGCUUUGGCAAUUGAACAAAUAACAGCUAAACAAAAAA---AUGCAACUGCUGGGGGAAAAAAAAAUA
.....(((((((((((((((.......))))))..................((...........---..))...)))))))))........... ( -21.32)
>DroSec_CAF1 112276 93 + 1
UUAAACUCCCGGCAUAAAGCACUGACGGCUUUGGCGAUUGAACAAAUAACAGCUAAACAAAAAAAAAGUGCAUCUGCUGGGGGA-AAAAAAGUA
.....(((((((((....(((((......((((((.(((.....)))....)))))).........)))))...))))))))).-......... ( -26.76)
>DroSim_CAF1 116154 90 + 1
UUAAACUCCCGGCAUAAAGCACUGACGGCUUUGGCGAUUGAACAAAUAACAGCUAAACAAAAAA---AUGCAUCUGCUGGGGAA-AAAAAAUUA
......((((((((....(((........((((((.(((.....)))....)))))).......---.)))...))))))))..-......... ( -19.49)
>consensus
UUAAACUCCCGGCAUAAAGCACUGACGGCUUUGGCGAUUGAACAAAUAACAGCUAAACAAAAAA___AUGCAUCUGCUGGGGGA_AAAAAAAUA
.....(((((((((((((((.......))))))..................((................))...)))))))))........... (-19.36 = -19.69 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:44 2006