Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,324,249 – 11,324,340 |
Length | 91 |
Max. P | 0.853624 |
Location | 11,324,249 – 11,324,340 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 84.81 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -18.28 |
Energy contribution | -18.92 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.14 |
Mean z-score | -2.97 |
Structure conservation index | 0.76 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11324249 91 - 20766785 ---------------CAGG--GUAUGCUGUGCGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUUUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU ---------------...(--(((.((...))(((((((..(((((((((((.(((.......))).))))))).))))..))))))).............)-)))... ( -19.20) >DroSec_CAF1 111687 91 - 1 ---------------CAGG--GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU ---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.30) >DroSim_CAF1 115520 91 - 1 ---------------CAGG--GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU ---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.30) >DroEre_CAF1 112883 91 - 1 ---------------CAGG--GUAUGCUAUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACGGACAAAUAUUUGAAAUU-GCCAAU ---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.00) >DroYak_CAF1 114376 91 - 1 ---------------CAGG--GUAUGCAAUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACGGACAAAUAUUGGAAAUU-GCCAAU ---------------...(--((((.(((((((((((((..(((((((((((((((.......))))))))))).))))..))))))))..))))).)...)-)))... ( -28.00) >DroAna_CAF1 104978 107 - 1 AACAGAUACAUAAGCGAGCACAUAUGUACUGCGC--CCAGCUGCAGAAUCUACAUAUUUUAUUUGUGGAAAUUUAUGCAAUUACUGGCAAAUAUUUGAACUCGGCCAAU ..(((.((((((.(......).))))))))).((--(.((...((((.((((((.........))))))......(((........)))....))))..)).))).... ( -20.70) >consensus _______________CAGG__GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU_GCCAAU ................................(((((((..(((((((((((((((.......))))))))))).))))..)))))))..................... (-18.28 = -18.92 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:43 2006