Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,306,934 – 11,307,046 |
Length | 112 |
Max. P | 0.620128 |
Location | 11,306,934 – 11,307,046 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -22.68 |
Energy contribution | -22.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.92 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11306934 112 - 20766785 UUCCCAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG .......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..)). ( -24.80) >DroSec_CAF1 94170 112 - 1 UUCCGAAAGCCUUCCAUCUGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG .......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..)). ( -25.70) >DroSim_CAF1 97885 112 - 1 UUCCGAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACAG ...(....)..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..... ( -24.30) >DroEre_CAF1 95392 112 - 1 UUCAGAAAUCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUUCUG ..(((((....((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))))))) ( -26.80) >DroYak_CAF1 96467 112 - 1 UUCAGAAAGCCUUCCAUCCGGAAACCUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGCCGAAAGCGUAAUAGAAACUAAUGGAAUCCUG .......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..))))).(((....).))........)..))))))..)). ( -21.30) >consensus UUCCGAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG ...........((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..... (-22.68 = -22.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006