Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,152,371 – 2,152,474 |
Length | 103 |
Max. P | 0.540021 |
Location | 2,152,371 – 2,152,474 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 84.14 |
Mean single sequence MFE | -42.19 |
Consensus MFE | -30.57 |
Energy contribution | -30.72 |
Covariance contribution | 0.15 |
Combinations/Pair | 1.45 |
Mean z-score | -1.85 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2152371 103 - 20766785 GGAGCUGAGGAAUGGGCAAUGAAGCGCCCGGCUUUGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGUGGUUGGGGCUGAUG ...(((.(....).))).....(((.(((((((..((.(((.((..(((((((.............)))))))....)).))).))...)))))))))).... ( -38.62) >DroSec_CAF1 3842 103 - 1 GGAGCUGCGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGCCUGGGGUUGUGGCUGGUG ..(((..(((..(((((.....(((((((....(((((((........))))))))))))))....(((((.......))))))))))...)))..))).... ( -46.80) >DroSim_CAF1 3808 103 - 1 GGAGCUGCGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGGGGCUGUGGCUGGUG ...(((((((..(((((........))))).(((((((((........))))))))).......)))))))...((.(((..((((....))))..))).)). ( -48.10) >DroEre_CAF1 4034 103 - 1 GGAGCUGAGGAAUGGGCAAUGAAGCGCCCUGUUUAGUGGCAACCAAUCGCUGUUGGGGUGCUAACUGCGGCGAAACGAGCUGCGGCUGUGGUUGUGGCUGGUG ((.((((..((((((((........)))).))))..))))..))..(((((((...(((....)))))))))).((.(((..((((....))))..))).)). ( -39.20) >DroYak_CAF1 4075 97 - 1 GGAGCUGGGGAAUGGGCAAUGAAGCGCCCGGUUUGGUGGCAACUAAUCGCUGCUGGGGUGCCAAUUGUGGCGAAACGAGCUGCGGCUGGGGUU------GGUG ...((((..((((((((........)))).))))..)))).(((((((.(.((((.(((((((....)))).......))).)))).).))))------))). ( -34.61) >DroAna_CAF1 3869 103 - 1 GCAACUGGGGAAUGGGUAGGGAUGUGCCCGUUUUUGUGGCCACAAGGCGUUGUUGCGGCAACACCUGCGGCGAGACUAGUUGCGGCUGUGGUUGCGGCUGGUG ((((((((((((((((((......))))))))))....(((.((.((.(((((....))))).)))).)))....))))))))((((((....)))))).... ( -45.80) >consensus GGAGCUGAGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGGGGUUGUGGCUGGUG ...............(((((...((((((....(((((((........)))))))))))))..)))))......((.(((((((((....))))))))).)). (-30.57 = -30.72 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:46 2006