Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,305,582 – 11,305,674 |
Length | 92 |
Max. P | 0.563704 |
Location | 11,305,582 – 11,305,674 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -30.74 |
Consensus MFE | -25.66 |
Energy contribution | -26.02 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.30 |
Structure conservation index | 0.83 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11305582 92 - 20766785 CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC ........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30) >DroSec_CAF1 92816 92 - 1 CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC ........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30) >DroSim_CAF1 96497 92 - 1 CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC ........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30) >DroEre_CAF1 94025 86 - 1 CACGCUUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCAC---CGCCGGAAAA-UUGGGCGAGA---UGC ........((((((((...((....(((((.(((.((...((((((......)))))))))))---.)))))....-.))..)))))---))) ( -30.40) >DroYak_CAF1 95152 87 - 1 CACGCUUCGCAUUUCGACACGUCCAUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCAA---CGCGGGGAAAUUUGGUCGAGA---UGC ........((((((((((..(((....)))..(((((...((((((......))))))....)---))))..........)))))))---))) ( -29.40) >consensus CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA_UUGGGCGAGUUGCUGC .....(((((((((((((......))))).)))))..........((((((....(((((.......))))).....)))))))))....... (-25.66 = -26.02 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006