Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,303,006 – 11,303,100 |
Length | 94 |
Max. P | 0.796925 |
Location | 11,303,006 – 11,303,100 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -20.09 |
Energy contribution | -20.28 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.84 |
Structure conservation index | 0.84 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11303006 94 + 20766785 GAUGCAGUCGCAUUCACACACAGCCAGAAAAUUGAUGGGCGAAAGGCGGAAAAAGCGUGAGAGUAAAACACAGUCUGACUGCAAUAAACGUGAC ..(((((((...(((((.....(((............))).....((.......))))))).((.....)).....)))))))........... ( -20.80) >DroSec_CAF1 90292 94 + 1 GAUGCAGUCGCACUCACACACAGCCAGAAAAUUGAUGGGCGAAAGGCGGAAAAAGCGUGAGAGUAAAACACAGUCUGACUGCAAUAAACGUGAC ..(((((((...(((((.....(((............))).....((.......))))))).((.....)).....)))))))........... ( -23.30) >DroSim_CAF1 93953 94 + 1 GAUGCAGUCGCACUCACACACAGCCAGAAAAUUGAUGGGCGAAAGGCGGAAAAAGCGUGAGAGUAAAACACAGUCUGACUGCAAUAAACGUGAC ..(((((((...(((((.....(((............))).....((.......))))))).((.....)).....)))))))........... ( -23.30) >DroEre_CAF1 91466 86 + 1 GAUGCAGCCGCACUC--------CCAGAAAAUUGAUGGGGGAAAGGCGGAAAAAGCGUGAGAGUGAAACACAGUCUGGCUGCAAUAAGCGUGAC .((((..((((.(((--------(((.........))))))....)))).....((((.(((.((.....)).))).)).)).....))))... ( -28.60) >consensus GAUGCAGUCGCACUCACACACAGCCAGAAAAUUGAUGGGCGAAAGGCGGAAAAAGCGUGAGAGUAAAACACAGUCUGACUGCAAUAAACGUGAC ..(((((((...(((((.....(((............))).....((.......))))))).((.....)).....)))))))........... (-20.09 = -20.28 + 0.19)
Location | 11,303,006 – 11,303,100 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -23.56 |
Consensus MFE | -19.42 |
Energy contribution | -20.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.89 |
Structure conservation index | 0.82 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11303006 94 - 20766785 GUCACGUUUAUUGCAGUCAGACUGUGUUUUACUCUCACGCUUUUUCCGCCUUUCGCCCAUCAAUUUUCUGGCUGUGUGUGAAUGCGACUGCAUC (((.(((((((((((((((((..(((.........)))((.......)).................)))))))))).))))))).)))...... ( -24.00) >DroSec_CAF1 90292 94 - 1 GUCACGUUUAUUGCAGUCAGACUGUGUUUUACUCUCACGCUUUUUCCGCCUUUCGCCCAUCAAUUUUCUGGCUGUGUGUGAGUGCGACUGCAUC ...........(((((((((((...))))(((((.(((((.......(((...................))).))))).))))).))))))).. ( -23.61) >DroSim_CAF1 93953 94 - 1 GUCACGUUUAUUGCAGUCAGACUGUGUUUUACUCUCACGCUUUUUCCGCCUUUCGCCCAUCAAUUUUCUGGCUGUGUGUGAGUGCGACUGCAUC ...........(((((((((((...))))(((((.(((((.......(((...................))).))))).))))).))))))).. ( -23.61) >DroEre_CAF1 91466 86 - 1 GUCACGCUUAUUGCAGCCAGACUGUGUUUCACUCUCACGCUUUUUCCGCCUUUCCCCCAUCAAUUUUCUGG--------GAGUGCGGCUGCAUC ...........(((((((.((..(((...)))..))...........((..(((((.............))--------))).))))))))).. ( -23.02) >consensus GUCACGUUUAUUGCAGUCAGACUGUGUUUUACUCUCACGCUUUUUCCGCCUUUCGCCCAUCAAUUUUCUGGCUGUGUGUGAGUGCGACUGCAUC (((.(((((((((((((((((..(((.........)))((.......)).................)))))))))).))))))).)))...... (-19.42 = -20.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:33 2006