Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,299,605 – 11,299,707 |
Length | 102 |
Max. P | 0.683590 |
Location | 11,299,605 – 11,299,707 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -19.25 |
Consensus MFE | -12.68 |
Energy contribution | -12.57 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.66 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11299605 102 + 20766785 GUAUGUGUGUG--AGCAUAAAUAUUUCAUUGGCGCACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAAAACGGCGAAUCUCCCCCC ((..(((.(((--.((...(((.....))).)).))).)))...---))((((......(((((((((.....)))))))))(((.......)))...))))..... ( -22.30) >DroVir_CAF1 81118 95 + 1 -----UGGUUGACUGCAUAAAUAUUUCAUUGGCAUGUUCGCCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCUAAAAA-UGUGGCG---CCCCAA -----.((.((.(..(((.....((((.(((((......)))))---..))))......(((((((((.....))))))))).......)-))..)))---.))... ( -22.00) >DroPse_CAF1 93592 95 + 1 ------GUGUG--GGCAUAAAUAUUUCAUUGGCGCACUCACCAAAGCGAGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA-AUAUCGAU---UCCCCC ------....(--((.((..((((((..(((((...(((........))).........(((((((((.....))))))))))))))))-))))..))---.))).. ( -21.90) >DroEre_CAF1 87905 95 + 1 ------GUGUG--AGCAUAAAUAUUUCAUUGGCGCACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAAAACGACGAACCCCCC-CC ------(((..--..)))..........(((((...(((.....---..))).......(((((((((.....)))))))))))))).................-.. ( -14.90) >DroAna_CAF1 80434 78 + 1 ------GUAUG--UGCAUAAAUAUUUCAUUGCCGUACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA------------------ ------(((((--.(((............)))))))).......---((.((....)).(((((((((.....))))))))))).....------------------ ( -12.50) >DroPer_CAF1 92875 95 + 1 ------GUGUG--GGCAUAAAUAUUUCAUUGGCGCACUCACCAAAGCGAGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA-AUAUCGAU---UCCCCC ------....(--((.((..((((((..(((((...(((........))).........(((((((((.....))))))))))))))))-))))..))---.))).. ( -21.90) >consensus ______GUGUG__AGCAUAAAUAUUUCAUUGGCGCACUCACCAA___GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA_AUGUCGAA___CCCCCC ............................(((((...(((.(......).))).......(((((((((.....)))))))))))))).................... (-12.68 = -12.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:32 2006