Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,296,621 – 11,296,724 |
Length | 103 |
Max. P | 0.691496 |
Location | 11,296,621 – 11,296,724 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.17 |
Mean single sequence MFE | -36.65 |
Consensus MFE | -33.73 |
Energy contribution | -33.70 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.32 |
Structure conservation index | 0.92 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11296621 103 - 20766785 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCGGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUUUUCCGG-------------- ....((((((((((..(........((((((....))))))(....)..((((.((....)).))))..)..))))).)))))...((((........)))).-------------- ( -36.40) >DroVir_CAF1 78367 103 - 1 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUAUUCAAC-------------- ....((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).)))))....(((((...)))))...-------------- ( -37.10) >DroPse_CAF1 90620 117 - 1 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUUUCGGCCCAGGCGGAGGUAUUGGCUGGCGGUGUGCUCGGGUAAGUUUUCCCCUACUUUUCGUUCCGU ....((((((((((..(........((((((....))))))(....)(((((((.(....)))))))).)..))))).)))))...((((.((((........)))).....)))). ( -35.90) >DroGri_CAF1 62524 103 - 1 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUUCUCGGGUAAGUUAUUCAAU-------------- ...(((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))))...(((((...)))))...-------------- ( -37.40) >DroWil_CAF1 140579 102 - 1 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCCAUUGCGGAAACACUUUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUUGGGUAAGUGUGUGUG--------------- ((((((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).)))))((((....)))).))))..--------------- ( -38.00) >DroMoj_CAF1 71302 103 - 1 UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACCCUCUCCGCUCAGGCGGAGGUUUUGGCUGGCGGUGUUCUAGGGUAAGUAAUUCAAC-------------- ...(((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))))...((((.....))))...-------------- ( -35.10) >consensus UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUAUUCAAC______________ ....((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))).................................. (-33.73 = -33.70 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:29 2006