Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,295,750 – 11,295,845 |
Length | 95 |
Max. P | 0.535337 |
Location | 11,295,750 – 11,295,845 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -35.43 |
Consensus MFE | -22.00 |
Energy contribution | -22.70 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.29 |
Mean z-score | -1.62 |
Structure conservation index | 0.62 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11295750 95 + 20766785 -------CCCCCCUGCUAAUCGCCCAGCGCAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU -------..((((((((..(((.((((((...))))...((((((...(....).)))))).)).)))..)))))).))((((((.....))))))...... ( -37.40) >DroVir_CAF1 77306 102 + 1 ACAAGUUCGCCCAAAUUAAUCGGCGAGAGUGUCGCUCACAAACGGAUUGGCGCCCUCGUUUAGUAGCAGGAGCAAACGAGCCAGUUCAUAGUUGGCUGCAUU (((..((((((..........))))))..))).((...(((..(((((((((((((.(((....)))))).))......))))))))....)))...))... ( -29.80) >DroSim_CAF1 86667 95 + 1 -------GCCCCCUGCUAAUCACCCCACACAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU -------..((((((((..(((.((...((.(((....)))((((.......)))).))...)).)))..)))))).))((((((.....))))))...... ( -33.10) >DroEre_CAF1 84099 94 + 1 -------C-CCCCUGCUAAUCGCCCAGCACAUCGCUCACGAGCGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU -------.-((((((((..(((.(((((.....)))...((((((...(....).)))))).)).)))..)))))).))((((((.....))))))...... ( -36.60) >DroYak_CAF1 84956 94 + 1 -------A-CCCCUGCUAAUCGCCCAGCACAUCGCUCACGAACGGAUUGGCACAGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU -------.-((((((((..(((.(((((.....)))...(((((.((((...))))))))).)).)))..)))))).))((((((.....))))))...... ( -37.30) >DroAna_CAF1 76989 99 + 1 -UAA--UCCUGCCCUCUAAUCGCCUAGUCCAUCGGACACGAACGGAUUGGCGCCAUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCGUAGUUGGCAUCUUU -...--..(((((..((....(((.(((((.(((....)))..))))))))((((((......)))).))))..)))))((((((.....))))))...... ( -38.40) >consensus _______CCCCCCUGCUAAUCGCCCAGCACAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU .........((((((((..(((((.........(....)((((((..((....)))))))).)).)))..)))))).))((((((.....))))))...... (-22.00 = -22.70 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006