Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,289,982 – 11,290,076 |
Length | 94 |
Max. P | 0.824590 |
Location | 11,289,982 – 11,290,076 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -43.12 |
Consensus MFE | -33.89 |
Energy contribution | -34.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -3.01 |
Structure conservation index | 0.79 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11289982 94 - 20766785 UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUCCUGGCGCUGGCCAGGGUGAUAAUUACACCA ((((((..((....(((((((.((.((.(((((((((......)))))).)---))...)).))...)))))))..))..))))))........... ( -41.20) >DroPse_CAF1 83546 97 - 1 UCGCCCAUGCACUCGCGCCAGACCUCGGGCUCGUCCACGUCGCUGGACGUGAGUGCGGUGGGUGGCAGUGGUGGUGUUCAGGCCGAUACUUACACAA (((((((((((((((((((((.(..((((.....)).))..))))).))))))))).))))))))..(((..((((((......))))))..))).. ( -46.30) >DroSec_CAF1 77196 94 - 1 UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUUCUGGCGCUGGCCAGGGUGAUAAUUACAUCA ((((((..((....((((((((((.((.(((((((((......)))))).)---))...)).))..))))))))..))..))))))........... ( -43.00) >DroSim_CAF1 80867 94 - 1 UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUCCUGGCGCUGGCCAGGGUGAUAAUUACACCA ((((((..((....(((((((.((.((.(((((((((......)))))).)---))...)).))...)))))))..))..))))))........... ( -41.20) >DroEre_CAF1 78491 94 - 1 UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCUUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA ((((((..((....(((((((.((.((((((((((((......)))))).)---)))..)).))...)))))))..))..))))))........... ( -43.50) >DroYak_CAF1 79171 94 - 1 UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCUUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA ((((((..((....(((((((.((.((((((((((((......)))))).)---)))..)).))...)))))))..))..))))))........... ( -43.50) >consensus UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG___GCAUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA ((((((..((....(((((((.....(((((((((((......))))))..........)))))...)))))))..))..))))))........... (-33.89 = -34.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:23 2006