Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,289,630 – 11,289,727 |
Length | 97 |
Max. P | 0.608754 |
Location | 11,289,630 – 11,289,727 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -19.45 |
Energy contribution | -22.57 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.74 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11289630 97 + 20766785 UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG ...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10) >DroGri_CAF1 54207 82 + 1 UUAAAUUUCAAUUGAUUAGCAAGGGUUGCCGUCAACGCUGCCACAUGGGGCUGCAGUUGCCCCGUAGUUGUUGUUGC---UGUUG-------------- ................((((((((....))..(((((((((.....(((((.......))))))))).)))))))))---))...-------------- ( -23.70) >DroSec_CAF1 76844 97 + 1 UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG ...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10) >DroSim_CAF1 80515 97 + 1 UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG ...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10) >consensus UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG__UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG ...................(((((..(.(((.(((((((((((((.(((((............)))))...))))))).)))))).))).)...))))) (-19.45 = -22.57 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:22 2006