Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,280,221 – 11,280,317 |
Length | 96 |
Max. P | 0.993296 |
Location | 11,280,221 – 11,280,317 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 72.35 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -21.07 |
Energy contribution | -21.74 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.67 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11280221 96 + 20766785 UUUUGGAACAAUCGGAGCUUUGAAUGGAGCAGUAGCUUUGGUUGGAGCUGCCGAUGGAA------------CAGGAGCGGGAGCACUUGCUGAUCCUGGAGCUGUGAU ..........((((((((((..(..(((((....)))))..)..))))).)))))((..------------((((((((((....)))))...)))))...))..... ( -33.00) >DroSec_CAF1 67429 90 + 1 UUUUGGAACAAUCGGAGCUUUGAAUGGAGCAGUAGCUUUGGUUGAAGCUGCCGAUGGAG------------------CGGGAGCAUUUGCUGAUCCUGGAGCUGUGAU ((..(((.((((((((((((..(..(((((....)))))..)..))))).)))))...(------------------(....))......)).)))..))........ ( -28.40) >DroSim_CAF1 69851 90 + 1 UUUUGGAACAAUCGGAGCUUUGAAUGGAGCAGUAGCUUUGGUUGGAGCUGCCGANNNNN------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ...........(((((((((..(..(((((....)))))..)..))))).)))).....------------------............................... ( -19.70) >DroEre_CAF1 68836 108 + 1 UUUGGGAACAAUCGGAGCUUUGAAUGGAGCAGUAGCUCUGGUCGGAGCUGCCAAUGGAGCUGGAGCUGCAGCAGGAGCGGGAGCAUUUGCUGAUCCUGGAGCUGUGAU .(((....)))..((((((((((..(((((....)))))..)))))))).))...(.(((((((....(((((((.((....)).))))))).)))...)))).)... ( -42.60) >DroYak_CAF1 69143 102 + 1 UUUUGGAACAAUCGGUGCCUUGAAUGGAGCAGUAGCUUUGAUUGGAGCUGCCGAUGGUGCAGGA------GCAGGAGCGGGAGCAUUUGCUGAUCCUGGAGCUGUGAU .......(((((((((..(((.((((((((....))))).))).)))..))))))(.(.(((((------(((((.((....)).)))))...))))).).))))... ( -34.10) >consensus UUUUGGAACAAUCGGAGCUUUGAAUGGAGCAGUAGCUUUGGUUGGAGCUGCCGAUGGAG____________CAGGAGCGGGAGCAUUUGCUGAUCCUGGAGCUGUGAU ..........(((((((((((((..(((((....)))))..)))))))).)))))......................(((((.((.....)).))))).......... (-21.07 = -21.74 + 0.67)
Location | 11,280,221 – 11,280,317 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 72.35 |
Mean single sequence MFE | -20.62 |
Consensus MFE | -11.74 |
Energy contribution | -12.57 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.57 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11280221 96 - 20766785 AUCACAGCUCCAGGAUCAGCAAGUGCUCCCGCUCCUG------------UUCCAUCGGCAGCUCCAACCAAAGCUACUGCUCCAUUCAAAGCUCCGAUUGUUCCAAAA ...(((......(((.(((..((((....)))).)))------------.)))(((((.((((........(((....)))........))))))))))))....... ( -21.79) >DroSec_CAF1 67429 90 - 1 AUCACAGCUCCAGGAUCAGCAAAUGCUCCCG------------------CUCCAUCGGCAGCUUCAACCAAAGCUACUGCUCCAUUCAAAGCUCCGAUUGUUCCAAAA ............(((.((((....)).....------------------....(((((.(((((.......(((....))).......)))))))))))).))).... ( -19.44) >DroSim_CAF1 69851 90 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------NNNNNUCGGCAGCUCCAACCAAAGCUACUGCUCCAUUCAAAGCUCCGAUUGUUCCAAAA ...............................------------------.....((((.((((........(((....)))........))))))))........... ( -11.89) >DroEre_CAF1 68836 108 - 1 AUCACAGCUCCAGGAUCAGCAAAUGCUCCCGCUCCUGCUGCAGCUCCAGCUCCAUUGGCAGCUCCGACCAGAGCUACUGCUCCAUUCAAAGCUCCGAUUGUUCCCAAA ......((..(((((.((((....)))...).)))))..))(((....)))..(((((.((((..((...((((....))))...))..))))))))).......... ( -28.60) >DroYak_CAF1 69143 102 - 1 AUCACAGCUCCAGGAUCAGCAAAUGCUCCCGCUCCUGC------UCCUGCACCAUCGGCAGCUCCAAUCAAAGCUACUGCUCCAUUCAAGGCACCGAUUGUUCCAAAA ..........(((((.(((.....((....))..))).------))))).((.(((((.((((........))))..((((........))))))))).))....... ( -21.40) >consensus AUCACAGCUCCAGGAUCAGCAAAUGCUCCCGCUCCUG____________CUCCAUCGGCAGCUCCAACCAAAGCUACUGCUCCAUUCAAAGCUCCGAUUGUUCCAAAA ............(((..(((....)))..........................(((((.((((........(((....)))........)))))))))...))).... (-11.74 = -12.57 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:21 2006