Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,275,814 – 11,275,919 |
Length | 105 |
Max. P | 0.801577 |
Location | 11,275,814 – 11,275,919 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -36.34 |
Consensus MFE | -25.83 |
Energy contribution | -25.88 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -1.46 |
Structure conservation index | 0.71 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11275814 105 - 20766785 CUCUAUCUCCACGAUGGCCGAGGUAAGCAACGUGUUCGACUGCAGCGCCGUGUAGUCCGGCAAUUGCUCCACCACCGACGGCUCCGGCAGCUGCAGAUCCUCAUU ..(((((.....)))))..((((.......((....)).(((((((((((.(.(((((((..............)))..))))))))).)))))))..))))... ( -34.54) >DroVir_CAF1 44015 96 - 1 CUCGAUUUCGACAAUGGCCGAGGUGAGCAAUGUGUUGGACUGCAGCGCACUGUAGUCGGGCAAUUGCUCCG---GCGAUAACUCUGGCA------GAUCCUCAUU .(((....)))..((.((((....(((((((.((((.((((((((....)))))))).)))))))))))))---)).))..........------.......... ( -34.60) >DroPse_CAF1 68191 105 - 1 CUCUAUUUCCACAAUGGCCGACGUGAGUAACGUGUUCGACUGCAGUGUCGUGUAGUUCGUCAGUUGCUCGGCCAGCGACGGCUCCGGCAGAUGGAGGUCUUCGUU ((((((((((....(((((.....(((((((.((..((((((((......))))).))).))))))))))))))((....))...)).))))))))......... ( -36.70) >DroGri_CAF1 38977 96 - 1 CUCGAUUUCCACAAUGGCCGAUGUGAGCAAUGUGUUGGACUGCAGCGCACUGUAGUCGGGCAAUUGCUCCG---GCGAUGGCUCCGGCA------GAUCCUCAUU ...(((((((.....(((((.((((((((((.((((.((((((((....)))))))).)))))))))))..---))).)))))..)).)------))))...... ( -38.20) >DroMoj_CAF1 44700 96 - 1 UUCGAUCUCCACAAUGGCCGAGGUGAGCAAAGUAUUCGACUGCAGCGCGCUGUAGUCUGGCAAUUGCUCGC---CGGACAGCUCCGGCA------AAUCCUCAUU ...................((((.((((((.((....((((((((....))))))))..))..))))))((---((((....)))))).------...))))... ( -37.80) >DroPer_CAF1 67029 105 - 1 CUCUAUUUCCACAAUAGCCGACGUGAGUAACGUGUUCGACUGCAGUGUCGUGUAGUUCGUCAGUUGCUCGGCCAGCGACGGCUCCGGCAGAUGGAGGUCUUCGUU ((((((((((.....(((((.((((((((((.((..((((((((......))))).))).))))))))).....))).)))))..)).))))))))......... ( -36.20) >consensus CUCGAUUUCCACAAUGGCCGAGGUGAGCAACGUGUUCGACUGCAGCGCCCUGUAGUCCGGCAAUUGCUCCG___GCGACGGCUCCGGCA______GAUCCUCAUU ................((((..(((((((((.((((.(((((((......))))))).)))))))))))...........))..))))................. (-25.83 = -25.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:20 2006