Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,275,091 – 11,275,183 |
Length | 92 |
Max. P | 0.655601 |
Location | 11,275,091 – 11,275,183 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.92 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -14.12 |
Energy contribution | -14.12 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.68 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11275091 92 + 20766785 UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUCGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU ...................((((((.........((((---(....)))))(((((..(((.....)))...)))))............)))))) ( -16.90) >DroPse_CAF1 67634 81 + 1 -------G-CCCACUUGUACUCGGG-----UA-UGCCACGUGGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAGUGACAAAGAU -------(-(((..........)))-----).-.(((.(((((((..((....))..)))))).).))).(((((((((.....))))))))).. ( -28.00) >DroSim_CAF1 64751 92 + 1 UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUCGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU ...................((((((.........((((---(....)))))(((((..(((.....)))...)))))............)))))) ( -16.90) >DroEre_CAF1 63715 92 + 1 UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUUGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU ................................((((((---(....))))))).....(((.....))).((((((((.......)))))))).. ( -16.80) >DroYak_CAF1 63950 92 + 1 UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUGGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU .................................((((.---.((...(((((.....)))))..))))))((((((((.......)))))))).. ( -19.00) >DroPer_CAF1 66472 81 + 1 -------G-CCCACUUGUACUCGGG-----UA-UGCCACGUGGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU -------(-(((..........)))-----).-.(((.(((((((..((....))..)))))).).))).((((((((.......)))))))).. ( -26.80) >consensus UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUUGCCA___UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU ..................................(((.....((...(((((.....)))))..))))).((((((((.......)))))))).. (-14.12 = -14.12 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:19 2006