Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,272,523 – 11,272,634 |
Length | 111 |
Max. P | 0.750204 |
Location | 11,272,523 – 11,272,634 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -22.26 |
Energy contribution | -22.82 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.54 |
Structure conservation index | 0.72 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11272523 111 - 20766785 CAGGCAGCUCUGGCCGCCCGGCGCCGUCAUUCGCCAGGCGGCGCCACUUACAGUCACCAAAACGACGCCAACUCCUGCAAUGAAAGAGAAAAAAAUCCAAAAAUGAG--AGGU ...((((...((((.....(((((((((........))))))))).......(((........)))))))....)))).............................--.... ( -33.70) >DroGri_CAF1 35101 105 - 1 AAGGCAGCUUUGGCCACCGGGCGCUGUCAUCCGCCAAGCAGCGCCGCUAACGGUAACCAGCACGACGCCAACUCCUGCAAAGACACACAU-------CA-AUUUGAGUUAUAU ...((((..(((((...((((((((((..........))))))))(((...((...))))).))..)))))...))))...(((.((...-------..-...)).))).... ( -29.60) >DroSec_CAF1 59754 109 - 1 CAGGCAGCUCUGUCCGCCCGGCGCCGUCAUCCGCCAGGCGGCGCCACUUACAGUCACCAAAACGACGCCAACUCCUGCAAUGAAAGAGAAAA-AAUCCA-AAAUGAG--AGGU ...((((....((..((..(((((((((........))))))))).......(((........)))))..))..))))..............-......-.......--.... ( -29.80) >DroEre_CAF1 61183 110 - 1 CAGGCAGCUCUGGCCGCCCGGCGCCGUCAUCCGCCAGGCGGCACCACUCACAGUCACCAAAACGACGCCAACUCCUGCAAUGGCAAAGGAAA-AAUUCAAAAAUGAG--AGGU ((((....))))((((((.((((........)))).))))))(((.((((..(((........)))((((..........))))........-..........))))--.))) ( -37.10) >DroWil_CAF1 106016 99 - 1 AAGGCAACUUUGGCCACCCGGCGCUGUCAUCCGCCAGGCAGCUCCACUCACUGUGACCAAAACAACGCCAACUCCUGCAACAAGAAAGAAAA------------GAG--AAAU ...(((...(((((.....((.((((((........)))))).))......(((.......)))..)))))....)))..............------------...--.... ( -22.30) >DroYak_CAF1 61301 110 - 1 CAGGCAGCUCUGGCCGCCGGGCGCCGUCAUUCGCCAGGCGGCACCACUUACAGUCACCAAAACGACGCCAACUCCUGGAAUCGAAAAGAAAA-AAUCCAAAAAUGAG--AGGU ..(((.......((((((.((((........)))).))))))..........(((........))))))..(((.((((.((.....))...-..)))).....)))--.... ( -32.30) >consensus CAGGCAGCUCUGGCCGCCCGGCGCCGUCAUCCGCCAGGCGGCGCCACUUACAGUCACCAAAACGACGCCAACUCCUGCAAUGAAAAAGAAAA_AAUCCA_AAAUGAG__AGGU ...((((...((((.....((.((((((........)))))).)).......(((........)))))))....))))................................... (-22.26 = -22.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:17 2006