| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,254,780 – 11,254,875 |
| Length | 95 |
| Max. P | 0.751213 |
| Location | 11,254,780 – 11,254,875 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.45 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -16.89 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11254780 95 + 20766785 --CUGGAUAAAAUACACUACAGGC------------AUUUGCAUUCGCAUUGGCGUUUUGCGGAGAAGUGCAAAAGUAUCUGCCAGAUACGCCAGCUCGAUAUCAACAU --...((((.............((------------....))..(((..(((((.(((((((......)))))))(((((.....))))))))))..)))))))..... ( -24.00) >DroSec_CAF1 41474 92 + 1 --CUGGCUAAAAUACA---CAGGC------------AUUUGCAUUUGCACUGUCGUUUUGCGGAUAAGUGCAAAAGUAUCUGCCAGAUACGCCAGCUCGAUAUCAAAAU --(((((.........---..(((------------(..(((.((((((((.(((.....)))...)))))))).)))..)))).(...)))))).............. ( -28.40) >DroSim_CAF1 44626 92 + 1 --CUGGCUAAAAUACA---CAGGC------------AUUUGCAUUUGCAUUGGCGUUUUGCGGAGAAGUGCAAAAGUAUCUGCCAGAUACGCCAGCUCGAUAUCAACAU --(((((.........---.....------------.(((((((((...((.((.....)).)).))))))))).(((((.....)))))))))).............. ( -24.30) >DroEre_CAF1 43286 87 + 1 --CUGGCUGAAAUACA---C----------------AUUUGCAUUUGCAUUGACGU-UUGCGGAGAAGUGCAAAAGUAUCUGCGAGAUACGCCAGCUCGAUAUCAACAU --(((((.........---.----------------.((((((((((((.......-.)))....))))))))).(((((.....)))))))))).............. ( -23.00) >DroYak_CAF1 42969 103 + 1 --CUGGCUAAAAUACA---CAGGCAUUUGUAUUUGCAUUUGCAUAUGCAUUGGCGU-UUGCGGAGAAGUGCAAAAGUAUCUGCCAGAUACGCCAGCUCGAUAUCAACAU --(((((.........---......(((((((((...((((((.((((....))))-.)))))).))))))))).(((((.....)))))))))).............. ( -30.30) >DroAna_CAF1 39087 80 + 1 UCCAAGCUAACAUAUA---CAACAA-----------AUUUGCA---------------UGCGGAGAAGUGCAAAAGUAUCUGCAAGAUACGCCAGCUCGAUAUCGACAU .....(((........---......-----------.((((((---------------(........))))))).(((((.....)))))...)))(((....)))... ( -15.80) >consensus __CUGGCUAAAAUACA___CAGGC____________AUUUGCAUUUGCAUUGGCGU_UUGCGGAGAAGUGCAAAAGUAUCUGCCAGAUACGCCAGCUCGAUAUCAACAU ..(((((..............................((((((((((((.........)))))....))))))).(((((.....)))))))))).............. (-16.89 = -18.45 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:15 2006