Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,252,096 – 11,252,191 |
Length | 95 |
Max. P | 0.680835 |
Location | 11,252,096 – 11,252,191 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 85.68 |
Mean single sequence MFE | -20.12 |
Consensus MFE | -13.68 |
Energy contribution | -14.84 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.98 |
Structure conservation index | 0.68 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11252096 95 - 20766785 GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAACGGAUUUUUUCUGUUAUCUUCACAACUUCCCCA .......((.........((((....))))....(((.(((..(((((((((((((.......))))...)))))))))))).)))......)). ( -19.00) >DroSec_CAF1 38746 95 - 1 GAUUUUCGGUAUAACAACUCUGUUAGCAAAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAUCGGAUUUAUUCUGUUAACCUUAAAACGUGCCCA .......(((((........((((((((......)))).)))).((((((((((((.......))))...))))))))..........))))).. ( -19.00) >DroSim_CAF1 41424 95 - 1 GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCUAUAACAGAGGUCCUUAAAUUGGAUUUAUUCUGUUAACCUUAAAAAGUGCCCA .......(((((......((((....))))......(((((...((((((((((((.......))))...))))))))..)))))...))))).. ( -21.90) >DroEre_CAF1 40578 95 - 1 AAUUUUCGGUAUAACAAAUCUGUAAACAGAUUCAUGUUAAGGAUUAACAGAGGUCCUUAAAUCGGCCCUUUUCUGUUAUCUAGAAAACUUCCCCA ..(((((....(((((((((((....))))))..))))).((((.((((((((((........))))....)))))))))).)))))........ ( -22.70) >DroYak_CAF1 40159 91 - 1 GAUUUUCGGUAUAACAACUCUGUAAACAGAUUCAUGUUAAGGAUUAACAGAGGUCCUGAAAUCGC----AUCCUGUUAUCUUUAAAACUGCCCCA .......((((.......((((....))))......((((((((.(((((.(((.(.......).----))))))))))))))))...))))... ( -18.00) >consensus GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAUCGGAUUUAUUCUGUUAUCUUUAAAACUUCCCCA .......((..(((((..((((....))))....))))).....((((((((((((.......)))))...)))))))..............)). (-13.68 = -14.84 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:14 2006