Locus 330

Sequence ID	2R_DroMel_CAF1
Location	2,144,747 – 2,144,844
Length	97
Max. P	0.986068

overview

Window 0

Location	2,144,747 – 2,144,844
Length	97
Sequences	6
Columns	109
Reading direction	reverse
Mean pairwise identity	69.31
Mean single sequence MFE	-22.43
Consensus MFE	-8.67
Energy contribution	-9.12
Covariance contribution	0.44
Combinations/Pair	1.06
Mean z-score	-2.45
Structure conservation index	0.39
SVM decision value	2.03
SVM RNA-class probability	0.986068
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2144747 97 - 20766785
AGAGCAGCGAAUUGCUUUUAAUUAGAUUUCUAAUCACGUGAGUG---AAAAA-GC-AGUCAAAAGAU----AGGCGGUCAUGUGAGGCUAGCCCUGCGGAAAAGUU---
...((((.((.((((((((..((((....))))((((....)))---)))))-))-)))).......----.(((((((......)))).))))))).........--- ( -30.00)
>DroVir_CAF1 147948 86 - 1
--AGAAGCGAGUUGCUUUAAAUUAGAUUUCUAAUCACGUGAGUG---AAGAA-AAAAA--A----ACA---GU--AGUCAUAUGAGGAGCAAU---CGAAAAAGAU---
--.....(((.(((((((........(((((..((((....)))---)))))-)....--.----...---..--..((....))))))))))---))........--- ( -18.10)
>DroYak_CAF1 122973 97 - 1
AGAGCAGCGAAUUGCUUUUAAUUAGAUUUCUAAUCACGUGAGUG---AAAAA-GC-AGUCAAAAGAU----AGGCGGUCAUGUGAGGCGAGCACUGCUGAAAAGUU---
..(((((.((.((((((((..((((....))))((((....)))---)))))-))-)))).......----..((.(((......)))..)).)))))........--- ( -27.90)
>DroMoj_CAF1 193057 88 - 1
--AGAAGCGAGUUGCUUUAAAUUAGAUUUCUAAUCACGUGAGUG---AAAAA-AAAGA--A----ACA---AUCGAGUCAUGUGAGGCUCCAU---CGAAAAAAUU---
--.....((((((.((((...((((....))))((((....)))---)....-)))).--)----)).---...(((((......)))))..)---))........--- ( -19.60)
>DroAna_CAF1 133653 96 - 1
AGAGCAGC-AAUUGCU-UUAAUUAGAUUUCUAAUCACGUGAGUG---GAAAAAAC-AA--AGUAAAU----AAGUGGUCAUGUGAGAAAAAGUUCCUCGAAAAGUCC-U
.(((.(((-..(((((-((..((((....))))((((....)))---).......-))--)))))..----......((....))......))).))).........-. ( -16.80)
>DroPer_CAF1 137095 106 - 1
AGAGCAGCACAUUGCUUUUAAUUAGAUUUCUAAUCACGUGAGUGUGAACAAA-UA-AAUCCAACGACGACCAGAGGGUCAUAUGAGGUCCAAUAAAAAAAAAAGUUCA-
.((((.((.....))((((.(((.((((((....(((....)))........-..-...........((((....))))....)))))).))).)))).....)))).- ( -22.20)
>consensus
AGAGCAGCGAAUUGCUUUUAAUUAGAUUUCUAAUCACGUGAGUG___AAAAA_AA_AA__AAAAGAC____AGGCGGUCAUGUGAGGCGAAAU___CGAAAAAGUU___
..(((((....))))).....((((....))))((((((((.(................................).))))))))........................ ( -8.67 =  -9.12 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:43 2006