Locus 3299

Sequence ID 2R_DroMel_CAF1
Location 11,248,091 – 11,248,193
Length 102
Max. P 0.760144
window5402

overview

Window 2

Location 11,248,091 – 11,248,193
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 92.81
Mean single sequence MFE -36.80
Consensus MFE -33.35
Energy contribution -32.60
Covariance contribution -0.75
Combinations/Pair 1.23
Mean z-score -1.29
Structure conservation index 0.91
SVM decision value 0.50
SVM RNA-class probability 0.760144
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11248091 102 + 20766785
GUCAAGGGCUCAGCAUGAAUUACUUGGCGCCGCCAAUGGGAAACUGUGGGACUCGAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCCCA
.....((((((..........(((((((((..(((((((....)))).....(((....)))..)))..)))))))))(((....))).......)))))). ( -38.30)
>DroSec_CAF1 34910 102 + 1
GUCAAGGGCUCAGCAUGAAUUACUUGGCGCCGCCAAUGGGAAACUGUGGGACUCGAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCUCA
.....((((((..........(((((((((..(((((((....)))).....(((....)))..)))..)))))))))(((....))).......)))))). ( -35.30)
>DroSim_CAF1 37562 100 + 1
GUCAAGGGCUCAGCAUGAAUUACUUGGCGCCGCCAAUG-GAAACUGUG-GACUCCAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCUCA
.....((((((..........(((((((((..(((..(-....)..))-)..((((........)))).)))))))))(((....))).......)))))). ( -34.30)
>DroEre_CAF1 36771 102 + 1
GUCAAGGGCUCAACACGAUACACUUGGCGCCGCCAAUGGGAAACUGUGCGACUCGAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCCCA
.....((((((....(((((((((((((((..(((..((....))((((.......))))....)))..))))))))).)...))))).......)))))). ( -42.00)
>DroYak_CAF1 36157 102 + 1
GUCAAGGGCUCAGCUCGAAAUACUUGGCGCCGCCAAUGGGAAACUGUGGGACUCGAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCCCA
.....((((.(((.((((....((((((((..(((((((....)))).....(((....)))..)))..)))))))))))).)))(((......))))))). ( -38.50)
>DroAna_CAF1 33275 102 + 1
GUCAAGGGUUCAACAUAAACUGCUUGGCGCCGUCAAUGGGAAAUUGCGGGACCCGGGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCUCA
.....((((((..((.....))...(((((((.((((.....)))))))(((...(((((.........)))))..))).......)))).....)))))). ( -32.40)
>consensus
GUCAAGGGCUCAGCAUGAAUUACUUGGCGCCGCCAAUGGGAAACUGUGGGACUCGAGCGCGAAAUGGGAGCGCCAAGUCGAACUGUCGCCUUAUCGAGCCCA
.....((((((..........(((((((((..(((..((....))(((.........)))....)))..)))))))))(((....))).......)))))). (-33.35 = -32.60 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:09 2006