Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,247,900 – 11,247,993 |
Length | 93 |
Max. P | 0.993091 |
Location | 11,247,900 – 11,247,993 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -21.00 |
Energy contribution | -21.20 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.00 |
Structure conservation index | 0.91 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11247900 93 + 20766785 GGUUUCUAUUUAGUGCACUCUUAAAAGUGUCACUUUUUAUGAGGCAUUAAGUGCAACUCCU-UUGGAGAUACCAAGAUUAUGC---UUACCUUUC-AG (((...((((((((((.(((..(((((.....)))))...)))))))))))))...((((.-..))))..)))..........---.........-.. ( -22.40) >DroSec_CAF1 34717 94 + 1 GGUUUCUAUUUAGUGCACUCUUAAAAGUGUCACUUUUUAUGAGGCAUUAAGUGCAACUCCUUUUGGAGAUACCAAGAUUAUGC---UUACCUUUC-AG (((...((((((((((.(((..(((((.....)))))...)))))))))))))...((((....))))..)))..........---.........-.. ( -24.50) >DroSim_CAF1 37370 93 + 1 GGUUUCUAUUUAGUGCACUCUUAAAAGCGUCACUUUUUAUGAGGCAUUAAGUGCAACUCCUUUUGGAGAUACCAAGAUUAUGC---UUACA-UUC-AG (((...((((((((((.(((..(((((.....)))))...)))))))))))))...((((....))))..)))..........---.....-...-.. ( -23.70) >DroEre_CAF1 36577 97 + 1 GGUUUCUAUUUAGUGCGCCCUUAAAAGUGACACUUUUUAUGAGGCAUUAAGUGCAACUCC-UCUAGAGAUACCGCGAUUAAGUGGACUACCUUUCUAG (((.((((((((((((((((..(((((.....)))))...).)))...........(((.-....))).....)).))))))))))..)))....... ( -23.90) >DroYak_CAF1 35962 95 + 1 GGUUUCUAUUUAGUGCACCCUUAAAAGUGACACUUUUUACGGGGCAUUAAGUGCAACUUCUUUUAGAGAUACCCAGAUUAAGC---UUACCUUUCUAG (((.((((((((((((.(((..(((((.....)))))...))))))))))))....((......))))).)))..........---............ ( -21.40) >consensus GGUUUCUAUUUAGUGCACUCUUAAAAGUGUCACUUUUUAUGAGGCAUUAAGUGCAACUCCUUUUGGAGAUACCAAGAUUAUGC___UUACCUUUC_AG (((...((((((((((.(((..(((((.....)))))...)))))))))))))...((((....))))..)))......................... (-21.00 = -21.20 + 0.20)
Location | 11,247,900 – 11,247,993 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -16.08 |
Energy contribution | -15.84 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.36 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11247900 93 - 20766785 CU-GAAAGGUAA---GCAUAAUCUUGGUAUCUCCAA-AGGAGUUGCACUUAAUGCCUCAUAAAAAGUGACACUUUUAAGAGUGCACUAAAUAGAAACC ((-(..(((((.---.((......))(((.((((..-.)))).)))......))))).......((((.(((((....)))))))))...)))..... ( -19.80) >DroSec_CAF1 34717 94 - 1 CU-GAAAGGUAA---GCAUAAUCUUGGUAUCUCCAAAAGGAGUUGCACUUAAUGCCUCAUAAAAAGUGACACUUUUAAGAGUGCACUAAAUAGAAACC ((-(..(((((.---.((......))(((.((((....)))).)))......))))).......((((.(((((....)))))))))...)))..... ( -21.40) >DroSim_CAF1 37370 93 - 1 CU-GAA-UGUAA---GCAUAAUCUUGGUAUCUCCAAAAGGAGUUGCACUUAAUGCCUCAUAAAAAGUGACGCUUUUAAGAGUGCACUAAAUAGAAACC ((-(.(-((...---((((.......(((.((((....)))).))).....))))..)))....((((.(((((....)))))))))...)))..... ( -20.60) >DroEre_CAF1 36577 97 - 1 CUAGAAAGGUAGUCCACUUAAUCGCGGUAUCUCUAGA-GGAGUUGCACUUAAUGCCUCAUAAAAAGUGUCACUUUUAAGGGCGCACUAAAUAGAAACC .......((....))..........(((.(((...((-((.((((....)))).)))).......(((((.((....))))))).......))).))) ( -17.50) >DroYak_CAF1 35962 95 - 1 CUAGAAAGGUAA---GCUUAAUCUGGGUAUCUCUAAAAGAAGUUGCACUUAAUGCCCCGUAAAAAGUGUCACUUUUAAGGGUGCACUAAAUAGAAACC (((((.(((...---.)))..)))))(((((.((...((((((.((((((..(((...)))..)))))).)))))).))))))).............. ( -20.10) >consensus CU_GAAAGGUAA___GCAUAAUCUUGGUAUCUCCAAAAGGAGUUGCACUUAAUGCCUCAUAAAAAGUGACACUUUUAAGAGUGCACUAAAUAGAAACC .......(((................(((.((((....)))).)))..(((.((((((...(((((.....)))))..))).))).)))......))) (-16.08 = -15.84 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:08 2006