Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,246,230 – 11,246,333 |
Length | 103 |
Max. P | 0.847230 |
Location | 11,246,230 – 11,246,333 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 89.26 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -17.22 |
Energy contribution | -17.71 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.72 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11246230 103 - 20766785 ------UUUUUUCUCUGGCAAAGGGAUGGGCUGGGGUGA-----AAAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU ------.............(((.(((((.((((((((..-----.......)))......(((......)))............))))).....((.....))..))))).))) ( -19.90) >DroSec_CAF1 33061 105 - 1 ------UUUU---GCUGGCAAAGGGAUGGGCUGGGGUGAUGAAAAUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU ------.(((---((((((.......((...((((((.((....))......((.......))...))))))...))......)))))))))...................... ( -24.42) >DroSim_CAF1 35727 105 - 1 ------UUUU---GCUGGCAAAGGGAUGGGCUGGGGUGAUGAAAAUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU ------.(((---((((((.......((...((((((.((....))......((.......))...))))))...))......)))))))))...................... ( -24.42) >DroYak_CAF1 34303 102 - 1 UUUUUAUUUU---GCUGGCAAAGGGAUGGGCUGGGC---------CAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU ((((((((((---((((((..(((..(.(((...))---------)...)..))).....(((......)))...........))))))))).))))))).............. ( -26.80) >consensus ______UUUU___GCUGGCAAAGGGAUGGGCUGGGGUGA_____AUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU ...................(((.(((((.((((((((..............)))......(((......)))............))))).....((.....))..))))).))) (-17.22 = -17.71 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:06 2006