| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,243,821 – 11,243,928 |
| Length | 107 |
| Max. P | 0.610562 |
| Location | 11,243,821 – 11,243,928 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 96.47 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -23.40 |
| Energy contribution | -23.68 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11243821 107 + 20766785 GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAGUGGCGGCGAAGGCGUAGCGAAAACCAAACAGCCACGGGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAG-- (((((.(((.(((...))).))).)))))((......(((((.((....))((............)).)))))((.((((....)))).)).......)).......-- ( -31.00) >DroSec_CAF1 30715 107 + 1 GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAGUGGCGACGCAGGCGUAGCGAAAACCAAACAGCCACGGGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAG-- (((((.(((.(((...))).))).)))))((......(((((.(((....)))...(.....).....)))))((.((((....)))).)).......)).......-- ( -29.30) >DroSim_CAF1 33355 107 + 1 GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAGUGGCGACGAAGGCGUAGCGAAAACCAAACAGCCACGGGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAG-- (((((.(((.(((...))).))).)))))((......(((((.(((....)))...(.....).....)))))((.((((....)))).)).......)).......-- ( -28.20) >DroEre_CAF1 32566 109 + 1 GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAUCCACGACGAAGGCGUAGCGAAAACCAAACAGCCACGAGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAGAC ...(((..((..(((..(((..(((((((.....)))))))...))).(((((.((............)).))...((((....)))))))....))).))..)))... ( -25.10) >DroYak_CAF1 31888 107 + 1 GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAGUGGCGACGAAGGCGUAGCGAAAACCAAACAGCCACGAGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAG-- (((((.(((.(((...))).))).)))))....((...(.((.(((....))).)).)...))...((.((.....((((....))))(((.....).)))).))..-- ( -24.00) >consensus GAAUCAAUCGAAUCGAAUUGGAUGGAUUCGCAAGGAAGUGGCGACGAAGGCGUAGCGAAAACCAAACAGCCACGGGCCAUAAAAAUGGGCCAAAAUGAGCGGGUGAG__ ...(((..((..(((..(((..(((.(((....))).((.(((.(....)))).)).....)))..)))....((.((((....)))).))....))).))..)))... (-23.40 = -23.68 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:05 2006