| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,238,516 – 11,238,612 |
| Length | 96 |
| Max. P | 0.922845 |
| Location | 11,238,516 – 11,238,612 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 87.95 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -15.78 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11238516 96 + 20766785 GAUGGAUUGAAUUUAAAGCCUAAUUGGCUUUAAAUUUUAAUUUCACUAUAAAAACUAAUUGUGGAAAUAAGCCUUUUCUAUUUACCAAAUGCACUU ((((((..((((((((((((.....))))))))))))...((((((..............))))))..........)))))).............. ( -20.14) >DroSec_CAF1 25191 95 + 1 GAUGGAUUGAGUUUAAAGCUUUAUUGGUUUUAAAUUUUAAUUUCACUAUCA-AACUAAUUGUGGAAAUAAGCCGUUUCUAUUUACCAAAUGCACUU ((((((((((((((((((((.....))))))))).))))))....))))).-........((((((((.....))))))))............... ( -16.60) >DroSim_CAF1 27818 95 + 1 UAUGGAUUGAGUUUAAAGCUUUAUUGGUUUUAAAUUUUAAUUUCACUAUCA-AACUAAUUGUGGAAAUAAGCCGUUUCUAUUUACCAAAUGCACUU ..(((...((((((((((((.....))))))))))))..............-........((((((((.....))))))))...)))......... ( -16.00) >DroEre_CAF1 25504 95 + 1 GAUGGAUUGCGCUUAAAGCUUUAUUGGCUUUACAUUUCAAUUUCACUACCA-AACUUAUUGUGGAAAUAAGCCGUUUCUAUUUACUAAAUAUACUU ((((((..((((((((((((.....)))))..........((((((.....-........)))))).)))).))).)))))).............. ( -17.02) >DroYak_CAF1 26587 92 + 1 ---GGAUUGCAUUUAAAGCUUUAAAGGCUUUAAAUUUUAAUUCCACUAUAA-AACUAAUUGUGGCAAUAAGCCGUUGCUAUUUACUUAAUACACUU ---(((....((((((((((.....))))))))))......))).......-........((((((((.....))))))))............... ( -18.60) >consensus GAUGGAUUGAGUUUAAAGCUUUAUUGGCUUUAAAUUUUAAUUUCACUAUCA_AACUAAUUGUGGAAAUAAGCCGUUUCUAUUUACCAAAUGCACUU ...(((..((((((((((((.....))))))))))))....)))................((((((((.....))))))))............... (-15.78 = -15.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:59 2006