Locus 3293

Sequence ID 2R_DroMel_CAF1
Location 11,233,931 – 11,234,044
Length 113
Max. P 0.610761
window5390

overview

Window 0

Location 11,233,931 – 11,234,044
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -23.03
Consensus MFE -16.88
Energy contribution -17.38
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.610761
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11233931 113 + 20766785
UUUCAUUUCCCUCGCGUGCAGUUCGCCGAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUUUCCAUUUUUGCCAAAACUGCACUUUUUC-----C--CUCGA
...............((((((((..((((.....))))..........((((((((((((.......))))))..))))))............))))))))......-----.--..... ( -24.30)
>DroPse_CAF1 23487 100 + 1
UUUCAUUUCCCUCGC------------GAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUCUCCAUUUUUGCCAAAACUGCACUUUUC------C--CCCGU
.............((------------(...(((((((....(((...(((.(.((((((.......)))))).).)))...)))....)))))))))).......------.--..... ( -18.60)
>DroEre_CAF1 21118 112 + 1
UUUCAUUUCCCUCGCGUGCAGUUCGCCGAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUUUCCAUUUUUGCCAAAACUGCACUU-UUC-----C--CUCGA
...............((((((((..((((.....))))..........((((((((((((.......))))))..))))))............))))))))..-...-----.--..... ( -24.30)
>DroWil_CAF1 44121 112 + 1
--------CCCGGGCGUGCAACUCUGCGAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUUUCCAUUUUUGCCAAAACUGCAGUUUUUCGCCUCCCCCGCAA
--------..((((.(((.((..(((((...(((((((....((.((.((((((((((((.......))))))..)))))).)).))..))))))))))))..)).)))....))))... ( -31.70)
>DroAna_CAF1 20086 107 + 1
UUUCAUUUCCCUCGCGUGCAGUUCACCGAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUUUCCAUUUUUGCCAAAAGUGCACUUUUUG-------------
...............(((((.((..((((.....))))..........((((((((((((.......))))))..))))))............)).)))))......------------- ( -20.70)
>DroPer_CAF1 22976 100 + 1
UUUCAUUUCCCUCGC------------GAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUCUCCAUUUUUGCCAAAACUGCACUUUUC------C--CCCGU
.............((------------(...(((((((....(((...(((.(.((((((.......)))))).).)))...)))....)))))))))).......------.--..... ( -18.60)
>consensus
UUUCAUUUCCCUCGCGUGCAGUUC_CCGAUUGUUUUGGAAUUGAUAUUGAAAGCUGUCAAUUUGCAUUUGACAUCGUUUUCCAUUUUUGCCAAAACUGCACUUUUUC_____C__CCCGA
...........................(...(((((((....((.((.((((((((((((.......))))))..)))))).)).))..)))))))..)..................... (-16.88 = -17.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:58 2006