Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,231,393 – 11,231,492 |
Length | 99 |
Max. P | 0.518293 |
Location | 11,231,393 – 11,231,492 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.21 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -15.55 |
Energy contribution | -17.80 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.48 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11231393 99 + 20766785 UUCCGACAAUCCCCUGGACCCGGAGUCCGGGGUAUUGAUGCCAC-----UUCACAUCGACUUGUCAGGAACAGCCGCUGGCAAGUUUU-UGAUGUGUCAGCCGGA .((((.((((.((((((((.....)))))))).))))..((...-----..(((((((((((((((((......).))))))))))..-.))))))...)))))) ( -42.80) >DroSec_CAF1 18360 91 + 1 UUCCGACAAUCCCCUGGACCCG--------GGUAUUGAUGCCAC-----UUCACAUCGACUUGUCAGGAACAGCCGCUGGCAAGUUUU-UGAUGUGUCAGCCGGA .((((.((((.(((.(....))--------)).))))..((...-----..(((((((((((((((((......).))))))))))..-.))))))...)))))) ( -31.90) >DroEre_CAF1 18475 98 + 1 UGCCGACAAUCCCCUGGUCCCGGAGCCCG-GGUAUUGAUGCCAC-----UUCACAUCGACUUGUCAGGAACAGCCGCUGGCAAGUUUU-UGAUGUGUCAGCCGGA ..(((.((((.(((.(((......))).)-)).))))..((...-----..(((((((((((((((((......).))))))))))..-.))))))...))))). ( -35.40) >DroWil_CAF1 39274 78 + 1 CUAGCCAAAUCU--UGC-------------UCUAUUGACGCCAC-----UUCA------CUUGUCAAACACAGCCGUUGGCAAGUUUU-UGAUGUGUCGGCCGGG (..(((......--.((-------------((....)).))(((-----.(((------((((((((.(......))))))))))...-.)).)))..)))..). ( -19.40) >DroYak_CAF1 18670 99 + 1 UUCCGACAAUCCCCUGGUCCCGGUGCCCG-GGUAUUGAUGCCAC-----UUCACAUCGACUUGUCAGGAACAGCCGCUGGCAAGUUUUGUGAUGUGUCAGCCGGU ..(((.((((.(((.(((......))).)-)).)))).((.(((-----.(((((..(((((((((((......).)))))))))).))))).))).))..))). ( -37.90) >DroAna_CAF1 17460 89 + 1 CUGACCCAAUCCCCUGG---------------CAUCGAUGCCACUUCACUUCACAUCGACUUGUCAGGAGCAGCCGCCGGCAAGUUUU-UGAUGUGUCAGCCCUG (((((.........(((---------------((....))))).........(((((((((((((.((........))))))))))..-.))))))))))..... ( -25.90) >consensus UUCCGACAAUCCCCUGG_CCCG________GGUAUUGAUGCCAC_____UUCACAUCGACUUGUCAGGAACAGCCGCUGGCAAGUUUU_UGAUGUGUCAGCCGGA .............((((.............((((....)))).........((((((((((((((((.........))))))))))....))))))....)))). (-15.55 = -17.80 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:57 2006