Locus 3291

Sequence ID 2R_DroMel_CAF1
Location 11,230,780 – 11,230,870
Length 90
Max. P 0.992243
window5388

overview

Window 8

Location 11,230,780 – 11,230,870
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 90.74
Mean single sequence MFE -24.55
Consensus MFE -22.84
Energy contribution -22.40
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -2.46
Structure conservation index 0.93
SVM decision value 2.32
SVM RNA-class probability 0.992243
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11230780 90 - 20766785
GCUCGUACGCACUUCUGGUAAACAGCAAAAGCGAUGGCAAGAGCAACAACAAAAACAGCAGCCAGACAACAAAUGAAGUUUGGCGCUUCC
((((((.(((..(((((.....))).))..)))...))..))))............(((.(((((((..(....)..))))))))))... ( -24.00)
>DroSec_CAF1 17751 90 - 1
GCUCGUACGCACUUCUGGUAAACAGCAAAAGCGGCGGCAAGAGCAACAGCAAAAACAGCAGCCAGACAACAAAUGAAGUUUGGCGCUUCC
((.(((.(((..(((((.....))).))..))))))))..((((....((.......)).(((((((..(....)..))))))))))).. ( -27.10)
>DroEre_CAF1 17908 78 - 1
GCUCGUACGCACUUCUGGUAAACAGCAAAAGCGAUGGCG------------AAAACAGCAGCCAGACAACAAAUGAAGUUUGGCGCUUCC
((.(((.(((..(((((.....))).))..)))))))).------------.....(((.(((((((..(....)..))))))))))... ( -23.00)
>DroYak_CAF1 18027 90 - 1
GCUCGUACGCACUUCUGGUAAACAGCAAAAGCGGUGGCAAAAGCAACAGCAAAAACAGCAGCCAGACAACAAAUGAAGUUUGGCGCUUCC
(((....(((..(((((.....))).))..)))..)))..((((....((.......)).(((((((..(....)..))))))))))).. ( -24.10)
>consensus
GCUCGUACGCACUUCUGGUAAACAGCAAAAGCGAUGGCAAGAGCAACAGCAAAAACAGCAGCCAGACAACAAAUGAAGUUUGGCGCUUCC
((.(((.(((..(((((.....))).))..))))))))..................(((.(((((((..(....)..))))))))))... (-22.84 = -22.40 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:56 2006