Locus 3290

Sequence ID 2R_DroMel_CAF1
Location 11,229,618 – 11,229,712
Length 94
Max. P 0.535991
window5387

overview

Window 7

Location 11,229,618 – 11,229,712
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 96.06
Mean single sequence MFE -32.96
Consensus MFE -30.76
Energy contribution -30.96
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.93
SVM decision value 0.00
SVM RNA-class probability 0.535991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11229618 94 + 20766785
GCGGCGGUAGGACAUUCCCCGCCCCUUUGGGCCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACUGCCAGCGACCACGCCUCC
..(((((..((.....))..((((....))))))...(((((((((.(((.((.....)).)))...)))))))))))).(((....))).... ( -33.60)
>DroSec_CAF1 16582 94 + 1
GCGGCGGUAGGACAUUCCCCGCCCCUUUGGGCCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACUGGCAGCGACCACGCCUCC
(((((((..((.....))))))).......(((....(((((((((.(((.((.....)).)))...)))))))))))).))............ ( -33.50)
>DroSim_CAF1 18129 94 + 1
GCGGCGGUAGGACAUACCCCGCCCCUUUGGGCCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACUGGCAGCGACCACGCCUCC
((((.((((.....))))))))((....))(((....(((((((((.(((.((.....)).)))...)))))))))))).(((....))).... ( -34.70)
>DroEre_CAF1 16814 94 + 1
GCGGCGGCAGGACUUUCCCCGCCCCUUUGGCCCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACAGCCAGCGACCACGCCUCC
..((((((.((......)).)))...(((......)))((((((((.(((.((.....)).)))...)))))))).))).(((....))).... ( -31.30)
>DroYak_CAF1 16887 94 + 1
GCGGCGGCAGGACUUUCCCCGCCCCUUUGGACCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACUGCCAGCGACCACGCCUUC
..((((((.((......)).)))..............(((((((((.(((.((.....)).)))...)))))))))))).(((....))).... ( -31.70)
>consensus
GCGGCGGUAGGACAUUCCCCGCCCCUUUGGGCCCACAAGUGCUGACAGCGAUAAAUUCUAAUGCCGGGUCAGCACUGCCAGCGACCACGCCUCC
(((((((..((.....)))))))....(((.......(((((((((.(((.((.....)).)))...)))))))))........))).)).... (-30.76 = -30.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:55 2006