Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,144,345 – 2,144,438 |
Length | 93 |
Max. P | 0.999869 |
Location | 2,144,345 – 2,144,438 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.40 |
Mean single sequence MFE | -40.30 |
Consensus MFE | -34.84 |
Energy contribution | -36.28 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.03 |
Mean z-score | -3.62 |
Structure conservation index | 0.86 |
SVM decision value | 4.32 |
SVM RNA-class probability | 0.999869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2144345 93 + 20766785 UGACCUGUGUGCAUGUGCAUGUUGUCAUGUGCUUGUGUGCGCGCGAGAGUGAGCGCAUGACA-----GGCACACAUCA-CGGAUAGUAAGUCCAAUUGG (((..(((((((..(..((((....))))..)(..(((((.(((....))).)))))..)..-----.))))))))))-.((((.....))))...... ( -37.80) >DroSec_CAF1 122943 98 + 1 UGACCUGUGUGUAUGUGCGUGCUGUCAUGUGCUUGUGUGCGCUCGAGAGUGAGCGCAUGACAGAACGGGCACACAUCA-CGGAUAGUAAGUCCAAUUGG ...((.((((((.(((.(((.((((((((((((..(...(....)...)..)))))))))))).))).))).))).))-)((((.....))))....)) ( -42.40) >DroSim_CAF1 126851 98 + 1 UGACCUGUGUGUAUGUGCGUGCUGUCAUGUGCUUGUGUGCGCGCGAGAGUGAGCGCAUGACAGAACGGGCACACAUCA-CGGAUAGUAAGUCCAAUUGG ...((.((((((.(((.(((.((((((((((((..(.....(....).)..)))))))))))).))).))).))).))-)((((.....))))....)) ( -43.10) >DroEre_CAF1 121261 99 + 1 UGACCUGUGUGUAUGUGCGUGCUGUCAUGUGCUUGUGUGCGCGGGAGAGUGAGCGCAUGACAGAACGGGCACACAUCAUAAGAAAGUAAGUCCAAUUGG ...(.(((((((.(((.(((.((((((((((((..(...(......).)..)))))))))))).))).))).))).)))).)................. ( -36.70) >DroYak_CAF1 122564 99 + 1 UGACCUGUGUGUAUGUGCGUUGUGUCAUGUGCUUGUGUGCGCGAGAGAGUGAGCGCAUGACAGAACGGGCACACAUCAACGGAAAGUUAGUCCAAUUGG ((((((((((((.(((.((((.(((((((((((..(...(....)...)..))))))))))).)))).))).))))..))))...)))).......... ( -41.50) >consensus UGACCUGUGUGUAUGUGCGUGCUGUCAUGUGCUUGUGUGCGCGCGAGAGUGAGCGCAUGACAGAACGGGCACACAUCA_CGGAUAGUAAGUCCAAUUGG ...(((((((((.....(((.((((((((((((..(...(....)...)..)))))))))))).))).))))))).....((((.....))))....)) (-34.84 = -36.28 + 1.44)
Location | 2,144,345 – 2,144,438 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.40 |
Mean single sequence MFE | -31.09 |
Consensus MFE | -24.09 |
Energy contribution | -24.57 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -3.57 |
Structure conservation index | 0.77 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2144345 93 - 20766785 CCAAUUGGACUUACUAUCCG-UGAUGUGUGCC-----UGUCAUGCGCUCACUCUCGCGCGCACACAAGCACAUGACAACAUGCACAUGCACACAGGUCA ((....(((.......)))(-((.(((((((.-----((((((((((........))))((......))..))))))....))))))))))...))... ( -28.70) >DroSec_CAF1 122943 98 - 1 CCAAUUGGACUUACUAUCCG-UGAUGUGUGCCCGUUCUGUCAUGCGCUCACUCUCGAGCGCACACAAGCACAUGACAGCACGCACAUACACACAGGUCA ((....(((.......)))(-((.((((((..(((.((((((((.((((......))))((......)).)))))))).)))..))))))))).))... ( -36.70) >DroSim_CAF1 126851 98 - 1 CCAAUUGGACUUACUAUCCG-UGAUGUGUGCCCGUUCUGUCAUGCGCUCACUCUCGCGCGCACACAAGCACAUGACAGCACGCACAUACACACAGGUCA ((....(((.......)))(-((.((((((..(((.(((((((((((........))))((......))..))))))).)))..))))))))).))... ( -34.90) >DroEre_CAF1 121261 99 - 1 CCAAUUGGACUUACUUUCUUAUGAUGUGUGCCCGUUCUGUCAUGCGCUCACUCUCCCGCGCACACAAGCACAUGACAGCACGCACAUACACACAGGUCA .......(((((....((....))((((((..(((.((((((((.(((..................))).)))))))).)))..))))))...))))). ( -28.67) >DroYak_CAF1 122564 99 - 1 CCAAUUGGACUAACUUUCCGUUGAUGUGUGCCCGUUCUGUCAUGCGCUCACUCUCUCGCGCACACAAGCACAUGACACAACGCACAUACACACAGGUCA ((....(((.......)))((((.(((((((..(((.(((((((.(((..................))).))))))).)))))))))))).)).))... ( -26.47) >consensus CCAAUUGGACUUACUAUCCG_UGAUGUGUGCCCGUUCUGUCAUGCGCUCACUCUCGCGCGCACACAAGCACAUGACAGCACGCACAUACACACAGGUCA ((....(((.......)))..((.(((((((..((.((((((((.(((..................))).)))))))).)))))))))))....))... (-24.09 = -24.57 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:42 2006