Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,224,433 – 11,224,539 |
Length | 106 |
Max. P | 0.652531 |
Location | 11,224,433 – 11,224,539 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.22 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -18.91 |
Energy contribution | -18.93 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.41 |
Structure conservation index | 0.80 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11224433 106 - 20766785 G---------AAAAAUCUGAAUG-GGCGA---GGACAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .---------.............-.((((---.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).).....(((.((....))))).))).... ( -24.30) >DroPse_CAF1 13286 105 - 1 G---------AAAAAUCUGAAUG-GU--A---GGACAAACUUUUUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACACAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .---------.......(((...-.(--(---.(((((((((((((((((....)))..((((((....))))))))).))))))))))).))....))).((....))........... ( -22.20) >DroWil_CAF1 28408 116 - 1 GUCGAAAAACAAAAGGCGAAACGUGGAAA---GGGCAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA ...............(((....((((..(---.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).).....))))((....))....))).... ( -25.90) >DroYak_CAF1 11797 106 - 1 G---------AAAAAUCUGAAUG-GGCGA---GGACAAAGUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .---------.............-.((((---.((((((.((-(((((((....)))..((((((....))))))..)))))).)))))).).....(((.((....))))).))).... ( -20.40) >DroAna_CAF1 11851 109 - 1 G---------AAAAAUCUGAAUG-GGCGAGCAGGACAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .---------.............-.(((..((.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).))....(((.((....))))).))).... ( -27.10) >DroPer_CAF1 12844 105 - 1 G---------AAAAAUCUGAAUG-GU--A---GGACAAACUUUUUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACACAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .---------.......(((...-.(--(---.(((((((((((((((((....)))..((((((....))))))))).))))))))))).))....))).((....))........... ( -22.20) >consensus G_________AAAAAUCUGAAUG_GGCGA___GGACAAACUU_UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA .................................(((((((((..((((((....)))..((((((....)))))))))...))))))))).((....(((.((....)))))...))... (-18.91 = -18.93 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:52 2006