Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,217,616 – 11,217,722 |
Length | 106 |
Max. P | 0.594220 |
Location | 11,217,616 – 11,217,722 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.23 |
Mean single sequence MFE | -32.97 |
Consensus MFE | -22.07 |
Energy contribution | -22.65 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.20 |
Mean z-score | -1.37 |
Structure conservation index | 0.67 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11217616 106 - 20766785 GGUUUCAGUGGGUGGCUGGGCGUCUGGCGGCGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGUGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.((((.....)))))))((.(((((((((....)))))))))))...((((((((...(((((....)......(((((....))))).)))).)))))))) ( -40.20) >DroSec_CAF1 4609 106 - 1 GGUUUCAGUGGGUGGCUGGUGGUCUAACGACGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGG ((((.((.((((..((.(((((((....)))....))))))..))......((((((((....))))))))...............)).)).))))..(....).. ( -36.50) >DroSim_CAF1 5799 106 - 1 GGUUUCAGUGGGUGGUUGGGCGUCGGAUGGCUAUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA (((..(((((.(((((((..(....).))))))).)))))..)))......((((((((...(((.(....)......(((((....)))))..))).)))))))) ( -35.30) >DroEre_CAF1 3300 94 - 1 GGUUUCAGUGGGUGGUUGGGCGGUUGG------------GUUGCCAGCAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.(..(((...((..(((((((((------------....)))))...((((((((....))))))))........))))..)).......)))..).))).. ( -31.70) >DroYak_CAF1 4697 84 - 1 GGUUUCAGUGGGUGGCUG----------------------CUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.(..(((.((((..----------------------..)))).....((((((((....)))))))).......(((((....)))))..)))..).))).. ( -27.50) >DroAna_CAF1 4800 102 - 1 ----UUUGUGGGUGGUAGGGUGGCUAAGGAAGGUGAAGAGCUGCCAACAAAUCGUCGCCAUCUGGCGGCAACAAUAAAAAGUUUUACAAUGUAACCGAGGCAAGGA ----(((((...((((..((..(((.............)))..))........((((((....))))))........................))))..))))).. ( -26.62) >consensus GGUUUCAGUGGGUGGCUGGGCGUCUGA_G_CGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA ((((.((.((((..((.......................))..))......((((((((....))))))))...............)).)).)))).......... (-22.07 = -22.65 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:51 2006