Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,215,639 – 11,215,751 |
Length | 112 |
Max. P | 0.855935 |
Location | 11,215,639 – 11,215,751 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.09 |
Mean single sequence MFE | -37.75 |
Consensus MFE | -22.12 |
Energy contribution | -23.68 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.37 |
Mean z-score | -1.86 |
Structure conservation index | 0.59 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11215639 112 + 20766785 UGAGAGUUCGUGCGGAGAAUUCGGGGAUCAGAAGAUAACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACUUUGGAUGGCCUUGCUGCAAUUGAAUCUUUCAAAACCGA------AU-- (((((((((.(((((....(((((..(((....)))..))))).((((((((((((.....)))))))).))))...........)))))...))).)))))).......------..-- ( -34.20) >DroSec_CAF1 1729 112 + 1 UGAGAGUUCAUGUGGAGAAUUCGGGGAUCAGAAGGUCACAGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGGUGGCCUUGCUCCAAUUCAAUCUUUCAGAGCCCA------AU-- ...(.((((.((.((((((((.((((.....((((((((..((((...((((((((.....)))))))).))))..)))))))).)))))))))..)))..)))))).).------..-- ( -43.00) >DroSim_CAF1 1774 112 + 1 UGAGAGUUCAUGUGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGAUGGCCUUGCUCCAAUUCAAUCUUACAGAGCCCA------AU-- ...(.((((.(((((((((((.((((.....(((((((.(.((((...((((((((.....)))))))).)))).).))))))).)))))))))..)).)))))))).).------..-- ( -41.30) >DroEre_CAF1 438 112 + 1 UGAGAGUUUGUGCGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUACAAAUGGGAUCUCGACCCUGGAUGGCUUUGCUUCAGUUCAAUUUGUCAGAUCCCU------AU-- ...((((((.......))))))(((((((..((((((((..(.((...((((((.(....)..)))))).)))..).)))))))....(((......)))...)))))))------..-- ( -35.50) >DroYak_CAF1 1792 112 + 1 UGAGAGUUCGUGUGGCGAAUUCGGGGAUCAGAAGGUCACCGGAGGAAAUGAGAUCCAAAUGGGAUCCCGACCUUGGAUGGCUCUGCUCCAAUUCAAUAUAUCUGACUCUA------AU-- ..((((((.(((((..(((((.((((..((((..((((.(.((((...((.(((((.....))))).)).)))).).)))))))))))))))))..)))))..)))))).------..-- ( -37.10) >DroPer_CAF1 3170 120 + 1 UGAGGAGGCAUGCGGCAAGUUCUUGAGACUCAAGGUGCUUGGCGGCAGCGAAAUCAAGAUGGGAUCGAGACCUUGGAUGGCUCUGCUAAAGUAUGAUGCUACAGAACCCGGCACCCAGGG ((.((...((((((.((((((((((.....))))).))))).)(((((.(..(((.....((........))...)))..).)))))...)))))...)).))...(((........))) ( -35.40) >consensus UGAGAGUUCAUGCGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGAUGGCCUUGCUCCAAUUCAAUCUUUCAGAACCCA______AU__ ...((((((.......))))))((((.....(((((((.(.((((...((((((((.....)))))))).)))).).))))))).))))............................... (-22.12 = -23.68 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:50 2006