Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,214,523 – 11,214,641 |
Length | 118 |
Max. P | 0.953090 |
Location | 11,214,523 – 11,214,641 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.00 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -16.74 |
Energy contribution | -17.26 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.25 |
Mean z-score | -1.89 |
Structure conservation index | 0.61 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11214523 118 - 20766785 AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGUAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCAAUAUGUUAGGUAAGUUUGGAUACAAUGAUAUU--AGAU ..........((.((((((.................(((((((.(((((....))))).)))))))((((.((.(((((((.....))).)).)).)).))))....)))))).--)).. ( -25.60) >DroSec_CAF1 655 105 - 1 AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUU-------------UU--AGAC ..((((...((((((((((...((.((.(....((.(((((((.(((((....))))).)))))))))..).)).))...)))))))..))).))))..-------------..--.... ( -25.20) >DroSim_CAF1 642 105 - 1 AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAUGUGAGUUU-------------UU--AGAC ....((((((........)))))).((((((.(((((((((((.(((((....))))).))))..........((....)).))))))).))))))...-------------..--.... ( -25.80) >DroYak_CAF1 663 114 - 1 AUACUCUUUCCUUAUAUCGAAAGAUCUCGCACAACAUGUGGCGCUGUUGCACCCAAUUCUGCCACAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUU-GGAUACAAUGA---U--AUAU ........(((....(((....)))(((((..(((((((((.(((((.(((........))).))))).))..((....)).)))))))..)))))..-)))........---.--.... ( -29.50) >DroAna_CAF1 632 92 - 1 ---------------AGUGGAAAAUCUGUCGCAGUUUAUGGCGUUGUUGCAGGCAACUUUGCCACAGUGACAAGUUUCGCCAUUACUUAAGGUAGGUUC-------------CUUGGGAA ---------------(((((.(((..((((((......(((((..((((....))))..)))))..))))))..)))..))))).(((((((......)-------------)))))).. ( -32.10) >consensus AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUU_____________UU__AGAC ..((((......(((((((...((.((......((.(((((((..((((....))))..)))))))))....)).))...)))))))......))))....................... (-16.74 = -17.26 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:49 2006