Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,214,339 – 11,214,433 |
Length | 94 |
Max. P | 0.789036 |
Location | 11,214,339 – 11,214,433 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 76.24 |
Mean single sequence MFE | -21.32 |
Consensus MFE | -10.40 |
Energy contribution | -10.76 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.25 |
Mean z-score | -1.95 |
Structure conservation index | 0.49 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11214339 94 + 20766785 AUAA-UGAAUUCAACUAACAAAUUUUGGCAUCGUCAACGUGCCAAGAUUGCAAAUCAAAAG----CAAUCUGUUUUGAAGACGAGGCGACGACGCAUUU ....-((..(((((..((((....((((((.((....))))))))((((((.........)----))))))))))))))..))..(((....))).... ( -23.40) >DroSec_CAF1 471 93 + 1 CUAU-UGAAUUCAACUAACAAAU-UUGGCAUCGUCAACGUGCCAAGAUUGCAAAUCAGAAG----CAAUCUGUUUGAAAGACGAGGCGACGACGCAUUU ....-....(((..((..(((((-.(((((.((....)))))))(((((((.........)----)))))))))))..))..)))(((....))).... ( -22.60) >DroSim_CAF1 466 85 + 1 AUAA-UGAAUUCAACUAACAAAU-UUGGCAUCGUCAACGUGCCAAGAUUGCAAAUCAGAAG----CAAUCUGUUUGAAAGAC--------GACGCAUUU ..((-((...((..((..(((((-.(((((.((....)))))))(((((((.........)----)))))))))))..))..--------))..)))). ( -20.40) >DroYak_CAF1 479 93 + 1 AUAA-UGAAUUCAACUAACACAUUUUGGCAUCGUCAACGUGCCAAGAUUGCAAAUCAGAAG----CAAUCAA-UUGAAAGACGUGGCGUUGGCGCAUUU ..((-((...(((((...(((...((((((.((....))))))))((((((.........)----)))))..-.........)))..)))))..)))). ( -25.50) >DroAna_CAF1 464 82 + 1 AGAAUGGAAUUCAGCUAAAACAUUUUCGUGUCGUCUACGUGCGAUGAUUGCAAAUUGCAAAUCCCCAAGCUGCU-----------------ACGUACUU ((.(((.....(((((.........(((((.((....)))))))...((((.....)))).......)))))..-----------------.))).)). ( -14.70) >consensus AUAA_UGAAUUCAACUAACAAAUUUUGGCAUCGUCAACGUGCCAAGAUUGCAAAUCAGAAG____CAAUCUGUUUGAAAGACG_GGCG__GACGCAUUU ....................((((((((((.((....)))))))))))).................................................. (-10.40 = -10.76 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:48 2006