Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,213,434 – 11,213,544 |
Length | 110 |
Max. P | 0.982306 |
Location | 11,213,434 – 11,213,544 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.97 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -24.62 |
Energy contribution | -26.38 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.03 |
Mean z-score | -2.52 |
Structure conservation index | 0.79 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11213434 110 - 20766785 CUCUGAAAUAUCGAUUAGCAAGAGCUAUUCGCACUCUUUGCAAAACAGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAGAAAACAUUUUUAAU----------GGGCCAAUUUCAAA ...((((((.(((..((((....)))).(((((....((((((......)))))).....)))))..)))....((((((.((((....)))).))----------))))..)))))).. ( -22.70) >DroSec_CAF1 8357 117 - 1 GUCUGAAAUAUCGAUUAGCAA--GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUU-UUAAUGGGCACGAGUGGGCCAAUUUCAGA .((((((((..(((.(((...--.))).)))(((((.........(((((((((......)))))))))....(((((((((((....))-)).))))))).))))).....)))))))) ( -35.10) >DroSim_CAF1 8456 118 - 1 GUCUGAAAUAUCGAUUAGCAA--GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUUUAAUGGGCACGAGUGGGCCAAUUUCAGA .((((((((..(((.(((...--.))).)))(((((.........(((((((((......)))))))))....(((((((.((((....)))).))))))).))))).....)))))))) ( -35.90) >DroEre_CAF1 7925 118 - 1 GUCUGAAAUAGCGAUUAGCAA--GCAAUUUGCACUCUUCGCAAAACGGGUUGCAAUUUAAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUAUAAUGUGCAUGAGUGGGGCAAAUUCAAA ((((......((.....))..--........(((((..((((...(((((((((......))))))))).......(((((((.....)))))))))))...)))))))))......... ( -31.10) >DroYak_CAF1 9530 118 - 1 GUCUGAAAUAUCGAUUAGCAA--GCUAUUUGCACUCUGCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUAUAAUUGGCACGAGUGGGCCAAUUUCCAG ....(((((..(((.(((...--.))).)))((((((((.(((..(((((((((......))))))))).......(((((((.....))))))))))))).))))).....)))))... ( -31.50) >consensus GUCUGAAAUAUCGAUUAGCAA__GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUUUAAUGGGCACGAGUGGGCCAAUUUCAAA ...((((((..(((.((((....)))).)))(((((...((....(((((((((......)))))))))....(((((.....)))))..........))..))))).....)))))).. (-24.62 = -26.38 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006