Locus 3282

Sequence ID 2R_DroMel_CAF1
Location 11,210,335 – 11,210,455
Length 120
Max. P 0.821269
window5378

overview

Window 8

Location 11,210,335 – 11,210,455
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 72.78
Mean single sequence MFE -34.97
Consensus MFE -21.68
Energy contribution -23.13
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.62
SVM decision value 0.68
SVM RNA-class probability 0.821269
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11210335 120 - 20766785
UCCGGCGCAUAAAAAAUAGGUGGGCGUGUGCAGAAAGGCCAUCCACGGAUAUCUUCCCAAUCGCGCGGGAGUGCCAUUUAUGAUUUUGUAGGAUAACCGAGGCACUACACCGCAAUUCUC
(((.((((...........((((..(((.((......)))))))))(((.....))).....)))).)))(((((...(((......)))((....))..)))))............... ( -33.60)
>DroSim_CAF1 5554 103 - 1
UCCGGCGCA-----------------UGUGCAGAAAGGCCAUCCACGGAUAUCUUCCCAAUCGCGCCGGAGUGCCAUUUAUGAUUCUAUAGGAUAUGAGAGGCACUACUCAGCAAUUCUC
(((((((((-----------------((.((......)))))....(((.....))).....))))))))(((((.((((((.(((....))))))))).)))))............... ( -35.40)
>DroYak_CAF1 6155 120 - 1
UCCGGCGCAAAAAAAAAUUUUGCGCAUGUGCAAGAGGGCCAUCCACGGAUAUUUUCCAAAUUCCGCGGGUUUGCCAUUUGCGAUUUUCAGGUUUAUUUGAGGCACCACUCCGCACCACUC
....((((((((.....))))))))..((((.((.(((((((((.((((............)))).))))((((.....))))...(((((....)))))))).)).))..))))..... ( -35.90)
>consensus
UCCGGCGCA_AAAAAA____UG_GC_UGUGCAGAAAGGCCAUCCACGGAUAUCUUCCCAAUCGCGCGGGAGUGCCAUUUAUGAUUUUAUAGGAUAUCAGAGGCACUACUCCGCAAUUCUC
(((((((((.................))))).....((....)).))))...............((((.((((((.((....((((....))))....))))))))...))))....... (-21.68 = -23.13 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:46 2006