Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,208,546 – 11,208,651 |
Length | 105 |
Max. P | 0.889621 |
Location | 11,208,546 – 11,208,651 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.14 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -13.98 |
Energy contribution | -13.66 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.31 |
Mean z-score | -1.60 |
Structure conservation index | 0.60 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11208546 105 + 20766785 GCCCCGGAGUUUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUAGAAGGGCAAUGCUAAUUAAUUGAAAUUAAAUGCUGUGC-------AUAGUU----AU----AUAUACUACAGAUC ((((...((((((.....(((((......)))))....))))))....)))).........................(((((.-------(((...----..----.)))..)))))... ( -15.60) >DroSec_CAF1 3876 81 + 1 GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUUAUUAAUGGAAAUUAAAUGC---------------------------------------AUU (((((.(((((((.....(((((......)))))....))))))).).))))(((((...(((((....)))))..))---------------------------------------))) ( -27.30) >DroSim_CAF1 3932 81 + 1 GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUGAUUAAUUGAAAUUAAUGAC---------------------------------------AUU (((((.(((((((.....(((((......)))))....))))))).).))))((((.(.((((((....)))))).))---------------------------------------))) ( -23.50) >DroEre_CAF1 5155 120 + 1 GCUUGGGACUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCAGAGGGUAAUGCAGAUUAGUGGGUUUUAAAUGCUGAACGAUCUUCUUAGCUUGCAAUACUGUUAUAUUACCGAUC .(((..((.((((.....(((((......)))))....)))).)).)))(((((((((((((.(..((((.......(.....)........))))..)))).))))...)))))).... ( -22.66) >DroYak_CAF1 4298 120 + 1 GCUUGGGAAUCUAUACAUAUGUGCCAAAUUACUUUAAUUGGAUUCGAAGGGCAUUGCAGCUUAAUGCCAACUAAAUGCUGAAUUCUGUUCUUAGCUUGCAAUACUUUUCUAUUACCGAAC ..(((((((((((.......(((......)))......)))))))((((((.((((((((.....)).........(((((.........))))).)))))).)))))).....)))).. ( -26.92) >consensus GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUGAUUAAUGGAAAUUAAAUGCUG___________UAG_U____AU_____U_UA_UAC_GAUC ((((..(((((((.....(((((......)))))....)))))))...)))).................................................................... (-13.98 = -13.66 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006