Locus 328

Sequence ID 2R_DroMel_CAF1
Location 2,140,743 – 2,140,856
Length 113
Max. P 0.819969
window667

overview

Window 7

Location 2,140,743 – 2,140,856
Length 113
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.90
Mean single sequence MFE -27.52
Consensus MFE -22.64
Energy contribution -22.52
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.82
SVM decision value 0.68
SVM RNA-class probability 0.819969
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2140743 113 - 20766785
CAGAUUUCUGUGUGCUGGUGCUAGGCGCGUAGAU--AUCUAUUGUGGCUCUAACCAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGCAUUUCCCAUCAUU-UUCCUGUU
.((((.((((((((((.......)))))))))).--))))...((((....(((((...((((....))))......)))))....))))(((.....)))......-........ ( -25.10)
>DroSec_CAF1 119404 115 - 1
UAGAUUUCUGUGUGCUGGUGCUAGGCGCCUAGAUAUAUCUCUUGUGGCUCUAACCAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGAAUUUCCCAUGAUU-UUCCUGUU
.((((.((((.(((((.......))))).))))...))))((((.(((...........)))....))))........((.....((((((((.....)))))))).-..)).... ( -29.30)
>DroSim_CAF1 123296 115 - 1
UAGAUUUUUGUGUGCUGGUGCUAGGCGCGUAGAUAUAUCUCUUGUGGCUCUAACCAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGCAUUUCCCAUGAUU-UUCCUGUU
..((..((((...((((((...((.((((.(((......))))))).))...))))...)).....)))).)).....((.....((((((((.....)))))))).-..)).... ( -26.90)
>DroEre_CAF1 117696 114 - 1
UAGAUAUCUGUGUGCUGGUGCCAGGCGCGUAGAU--AUCUCUUGUGGUUCUAACCAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGCAUUUCCCAUAUUUUUUCCUGUU
.((((((((((((((((....)).))))))))))--))))((..((((...(((((...((((....))))......)))))...))))..))....................... ( -31.50)
>DroYak_CAF1 119150 113 - 1
UAGAUUUCUGUGUGCUGGUGCUAGGCGCGUAGAU--AUCUCUUGUGGUUCUAACUAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGCAUUUCCCAUAAUU-UUCCGGUU
.((((.((((((((((.......)))))))))).--))))...(..(((......)))..)...............((((.....((.(((((.....))))).)).-..)))).. ( -24.80)
>consensus
UAGAUUUCUGUGUGCUGGUGCUAGGCGCGUAGAU__AUCUCUUGUGGCUCUAACCAAUUGCUUGUUCAAGUUCAUUCUGGUUUUUAUCAUGGGCAUUUCCCAUAAUU_UUCCUGUU
.((((.((((((((((.......))))))))))...))))...((((....(((((...((((....))))......)))))....))))(((.....)))............... (-22.64 = -22.52 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:40 2006