Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,202,593 – 11,202,706 |
Length | 113 |
Max. P | 0.707852 |
Location | 11,202,593 – 11,202,706 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -47.22 |
Consensus MFE | -28.51 |
Energy contribution | -29.93 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.27 |
Mean z-score | -1.63 |
Structure conservation index | 0.60 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11202593 113 + 20766785 AAGCUGCCCGUGCGGUGGUGGCUUGCAGCUGUUCCUGGAGGCAAGUUCGCUCUCUCGCAUGCUCCUGCCGCAAUUGCUCAAGCAGGGCUUUGCACUGAUGCAGUGCCUCGGAU .....((((.(((((..(..((.(((((......))((((((......)).)))).))).))..)..)))))..(((....)))))))...((((((...))))))....... ( -43.80) >DroVir_CAF1 174562 113 + 1 AGCUGGCGCGUGUGUUGCAUGCCUGGAGCUGCUCCUCCAGCGCGGCGCGCUCCCUGGCAUGCUCCUGCUUCAGCUGCUCCAGCAGCGUUUUGCAUUGUUGCACAGCCGCCGCU (((.((((..(((((.(((((((.(((((.((.((........)).)))))))..)))))))...(((....(((((....))))).....))).....)))))..))))))) ( -54.30) >DroGri_CAF1 173851 113 + 1 ACGCCGCCCGAUUGUUGCUCGCCAGGAGCUGUUCCUCAAGUGCGCCACGCUCCCGAGCAUGCUCCUGUUUGAGUUGCUCGAGCAGCGUUUUACACUGCUGCACUGCAUCCGCU ((((.((.(((..((.(((((.((((((((((((....((((.....))))...))))).)))))))..))))).))))).)).)))).......(((......)))...... ( -39.70) >DroSim_CAF1 117173 113 + 1 AAGCUGCCCGUGCGGUGGUGGCUUGCAGCUGUUCCUGGAGGGCAGUUCGCUCUCUCGCAUGCUCCUGCCGCAAUUGCUCCAGCAGGGCUUUGCACUGAUGCAGUGCAUCGGAU ..((.((((.(((((..(..((.(((((......))(((((((.....))))))).))).))..)..)))))..(((....)))))))...)).(((((((...))))))).. ( -51.90) >DroEre_CAF1 118536 113 + 1 ACGCAGCCCGUGCGGUAGCGGCUUGAAGCUGUUCCUGGAGGGCAGCUCGCUCUGUCGCGUGCUCCUGCCGCAAUUGCUCCAGCAGCGCUUUGCACUGGUGUAGUGCUUCGGAU .((.(((...((((((((.(((....((((((((.....))))))))(((......))).))).))))))))(((((.((((..((.....)).)))).)))))))).))... ( -45.70) >DroYak_CAF1 116692 113 + 1 ACGCGGCCCGUGCGGUAGUGGCUUGCAGCUGUUCCUGGAGGGCAGUUCGCUCUCUCGCGUGCUCCUGCCGCAAUUGCUCCAGCAGGGCUUUGCACUGAUGUAGUGCUUCGGAU .((.(((((.((((((((..((.(((((......))(((((((.....))))))).))).))..))))))))..(((....))))))))..((((((...))))))..))... ( -47.90) >consensus ACGCGGCCCGUGCGGUGGUGGCUUGCAGCUGUUCCUGGAGGGCAGCUCGCUCUCUCGCAUGCUCCUGCCGCAAUUGCUCCAGCAGCGCUUUGCACUGAUGCAGUGCAUCGGAU .....((((.((((((((.(((.....(((((((.....)))))))..((......))..))).))))))))..(((....)))))))...((((((...))))))....... (-28.51 = -29.93 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:43 2006