Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,199,957 – 11,200,077 |
Length | 120 |
Max. P | 0.598111 |
Location | 11,199,957 – 11,200,077 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.75 |
Mean single sequence MFE | -40.48 |
Consensus MFE | -31.95 |
Energy contribution | -31.79 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -1.48 |
Structure conservation index | 0.79 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11199957 120 + 20766785 CCAUAGCUGACAAUACCUAGCUGAACGGUGCGGGUUAUGCGGCCAUUUGACAUUUUCCUCGACAGCGGACCGCCUGAGUCACCGCUACAGGUGUCCGCCCGCCAUUGUCCAGCGCAGAAC .....(((((((((((((.(((....)))..))))...((((....((((........))))..((((((.((((((((....))).))))))))))))))).))))).))))....... ( -41.70) >DroSec_CAF1 114413 120 + 1 CCAUAGCUGACAAUACCUAGCUGAACGGUGCGGGUUAUGCGGCCAUUUGACAUUUUACUCGACAGCGGACCACCUGAGUCACCGCUACAGGUGUCCGCCCGCCACUGUCCAGCGCAGAAU ................((.((((.(((((((((((......((...((((........))))..))((((.((((((((....))).)))))))))))))).)))))).))))..))... ( -42.40) >DroSim_CAF1 113971 120 + 1 CCAUAGCUGACAAUACCUAGCUGAACGGUGCGGGUUAUGCGGCCAUUUGACAUUUUACUCGACAGCGGGCCGCCUGAGUCACCGCUACAGGUGUCCGCCCGCCACUGUCCAGCGCAGAAU ................((.((((.(((((((((((...((((((..((((........)))).....))))))..(.(.((((......)))).))))))).)))))).))))..))... ( -44.30) >DroEre_CAF1 115953 120 + 1 CCAUAGCUAACAAUUCCUAACUGAACGGUGCGGGUCAUUUGGCCAUUUGACAUUUUCCUUAGCAGCGGACCGCCUGAGUCACCGCUACAGGUAUCCACUAGCGCUUGUCCCGCGCAGAAC ...........................(((((((.((...(((.....((.....))....((((.(((..((((((((....))).))))).))).)).))))))).)))))))..... ( -32.70) >DroYak_CAF1 114065 120 + 1 CCAUAGCUAACAAUUCCUAACUGAACGGUGCGGGUCACUUGACCAUUUGACAUUUUCCUAAGCAGCGGACCGCCUGAGUCACCGCUACAGGUGUCCGCUCGCGAUUGUCCCGCGCAGAAC ....................(((..(((..((((((....)))).................(((((((((.((((((((....))).)))))))))))).))...))..)))..)))... ( -41.30) >consensus CCAUAGCUGACAAUACCUAGCUGAACGGUGCGGGUUAUGCGGCCAUUUGACAUUUUCCUCGACAGCGGACCGCCUGAGUCACCGCUACAGGUGUCCGCCCGCCAUUGUCCAGCGCAGAAC ...((((((........))))))....((((.((((....))))....((((............((((((.((((((((....))).))))))))))).......))))..))))..... (-31.95 = -31.79 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:42 2006