Locus 3277

Sequence ID 2R_DroMel_CAF1
Location 11,195,009 – 11,195,107
Length 98
Max. P 0.838265
window5373

overview

Window 3

Location 11,195,009 – 11,195,107
Length 98
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 65.03
Mean single sequence MFE -22.37
Consensus MFE -12.91
Energy contribution -11.03
Covariance contribution -1.88
Combinations/Pair 1.50
Mean z-score -1.37
Structure conservation index 0.58
SVM decision value 0.74
SVM RNA-class probability 0.838265
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11195009 98 + 20766785
AUUUUAGUACCGUAGCGUAACGGUAUCUUCUGAUGGUGUGACCGUAAGGCACAGUGUUAUUUG-UGAUUUUUAAAUAAAUGAAAAUACUGUUAAGAGCU-----
.............(((.(((((((((.(((.((((.((((.((....)))))).))))(((((-(.........))))))))).)))))))))...)))----- ( -26.50)
>DroEre_CAF1 112150 99 + 1
U-----GCGCUGUGGCGUAACAGUCUGUUCAUGAUGUGUGACCAUAUAACACAUCGGUUUUUGGCGCUUUUUAAAGAAAUAAGAAUACUGUUAAGAAUUAUAUU
.-----((((....))))((((((.......((((((((.........))))))))(((((((...(((....)))...)))))))))))))............ ( -23.00)
>DroYak_CAF1 109639 94 + 1
GUUUUAGUACCACCACGUAACGGUCUGUUCUGGGUGUGUGACCAUACUACUCAUUGGCUUUUG-UGCUUUUCAAAUCAAUGAAAAUACUGUUAUU---------
................((((((((........((((((....))))))..(((((((..((((-.......)))))))))))....)))))))).--------- ( -17.60)
>consensus
AUUUUAGUACCGUAGCGUAACGGUCUGUUCUGGAUGUGUGACCAUAAAACACAUUGGUUUUUG_UGCUUUUUAAAUAAAUGAAAAUACUGUUAAGA__U_____
......((......)).(((((((........(((((((.........)))))))............((((((......)))))).)))))))........... (-12.91 = -11.03 +  -1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006