Locus 3276

Sequence ID 2R_DroMel_CAF1
Location 11,194,210 – 11,194,309
Length 99
Max. P 0.904950
window5372

overview

Window 2

Location 11,194,210 – 11,194,309
Length 99
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 76.55
Mean single sequence MFE -27.10
Consensus MFE -13.27
Energy contribution -15.59
Covariance contribution 2.32
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.49
SVM decision value 1.04
SVM RNA-class probability 0.904950
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11194210 99 - 20766785
AAAAUCAAAUUGUUCCAAAUCAAAUACUGGAAG--------------------UCUGAUAUCUGGAGGUUUUCCAUUGAAAGGUCUUUCCAGCUAUGUCAAGUAACAGUCUUCCAGCAA
..........................(((((((--------------------.(((.((((((((((....((.......))..))))))).........))).))).)))))))... ( -21.90)
>DroSec_CAF1 108737 99 - 1
AAAAUCAAAUUGUUCCACAUCAAAUACUGGAAG--------------------CCUGAUAUCUGGAGGUUUUCCAUCGAAAGGUAUUUCCAGCUAUGUCAGGUAACAGUCUUCCAGCAU
..........................(((((((--------------------((((((((((((((((.....(((....)))))))))))..)))))))).......)))))))... ( -29.21)
>DroSim_CAF1 108103 97 - 1
AAAAUCAAAUUGUUCCACAUCAAAUACUGGAAG--------------------UCUGAUAUCUGGAGGUUUUCCAUCGAAAGGUAUUUCCAGCU--GUCAGGUAACAGUCUUCCAGCAU
..........................(((((((--------------------.(((.((((((..((((....(((....)))......))))--..)))))).))).)))))))... ( -28.70)
>DroEre_CAF1 111321 117 - 1
AAAAUCGAAUUGUUCCAAAUCAAAUACUGGAAAAUCAACUCAAUUGUGGGCAGAC--AUAACUGGAGGUUUCCCAUCGAAAGGUCUUUCCAGCGAUGUUGGGUAAAACUCUUCCAGCGG
...((((..(((........)))...(((((((.....(((..(((((......)--))))...))).......(((....))).)))))))))))((((((.........)))))).. ( -26.60)
>DroYak_CAF1 108807 119 - 1
AAAAUCCAAUUGUUCCAAAUCAAAUACUGGAAAAUCAAUUCAAUCGUGGGCUGGCAGAUAACUGGAGCUUUCCCAUGAACAGGUCUUUCCAUUGAUGUCGGGUAACAGUCCUCCAGUGG
........................(((((((..((((((....(((((((..(((...........)))..)))))))...((.....))))))))...(((......)))))))))). ( -29.10)
>consensus
AAAAUCAAAUUGUUCCAAAUCAAAUACUGGAAG____________________UCUGAUAUCUGGAGGUUUUCCAUCGAAAGGUCUUUCCAGCUAUGUCAGGUAACAGUCUUCCAGCAG
..........................(((((((....................(((((((.(((((((....((.......))..)))))))...))))))).......)))))))... (-13.27 = -15.59 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:40 2006