Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,188,664 – 11,188,760 |
Length | 96 |
Max. P | 0.938016 |
Location | 11,188,664 – 11,188,760 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 68.19 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -6.90 |
Energy contribution | -8.36 |
Covariance contribution | 1.46 |
Combinations/Pair | 1.11 |
Mean z-score | -2.24 |
Structure conservation index | 0.29 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11188664 96 - 20766785 AUAAGACCACAAUCCAUGAUAUAUGUACGUAUGUACCACUCUCGAAAGGUUGACGUA--------AAUCAACAGUCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------ ...(((((..(((((.((((.....(((((....(((..........)))..)))))--------.))))(((((((.....)))))))..))).))..)))))------ ( -24.50) >DroSec_CAF1 103252 92 - 1 AUAAGACCACAACCCAUGAUAUAUGU----AUGUACCACUCUCGAAAGGUUGAUGUA--------AAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------ ...(((((..(((((.((((.(((((----....(((..........)))..)))))--------.))))((((.((.....)).))))..))).))..)))))------ ( -23.50) >DroSim_CAF1 102266 83 - 1 AUAAGACCACAACCCAUGAUAUAUGU----CUGUACCACUCUCGAAAGGUUGAUGUA--------AAUCAACAGACUUUAAUGG---------GCUUAAGGUCU------ ...(((((..(((((((.......((----((((.......((....)).((((...--------.))))))))))....))))---------).))..)))))------ ( -24.00) >DroEre_CAF1 105685 86 - 1 AUAAGCC--------AUCUC----------AUAUACAACUCUCGAAAGGUUGAUGUACAUACAUAGAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------ .((((((--------.....----------...((((.(..((....))..).)))).............((((.((.....)).))))...))))))......------ ( -20.00) >DroAna_CAF1 110393 88 - 1 AUAAGCUUCGUACUUAUGAUA------------UGCCACUCUCGAAAGUUGGCGGCA--------AAUCAUACGG-UUUUAUGGGCUCAGAGGGCUUAAG-UCACUCGUA ...(((((...(((((((((.------------((((.((..(....)..)).))))--------.)))))).))-).....)))))..((((((....)-)).)))... ( -27.50) >consensus AUAAGACCACAACCCAUGAUAUAUGU____AUGUACCACUCUCGAAAGGUUGAUGUA________AAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU______ ..........................................(....)((((((............)))))).(((((((...((((.....)))))))))))....... ( -6.90 = -8.36 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:39 2006